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qiime2
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provenance-lib
QIIME 2 Provenance Replay Tools
BSD 3-Clause "New" or "Revised" License
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Memoize topological sort, and related questions
#60
ChrisKeefe
opened
2 years ago
0
Add DOIs to citations for common methods.
#59
ChrisKeefe
closed
2 years ago
1
DirectoryParser's recursive behavior should be optional.
#58
ChrisKeefe
closed
2 years ago
0
Allow user to pass output folder for recorded metadata dumps
#57
ChrisKeefe
closed
2 years ago
0
Cleanup for Alpha review
#56
ChrisKeefe
closed
2 years ago
0
citation for provenance replay paper
#55
ChrisKeefe
opened
2 years ago
1
Report plugin dependencies missing from the environment
#54
ChrisKeefe
opened
2 years ago
3
ENH: ProvDAG can parse full directories from a fp
#53
ChrisKeefe
closed
2 years ago
0
Use ExecutionUsage to test validity of written usage examples
#52
ChrisKeefe
opened
2 years ago
0
DOC: readme updates
#51
ChrisKeefe
closed
2 years ago
0
CI: MYPY and coverage checks
#50
ChrisKeefe
opened
2 years ago
0
Initial CI workflow
#49
ChrisKeefe
closed
2 years ago
2
Adds Lint/Test CI workflow
#48
ChrisKeefe
closed
2 years ago
0
Citation/methods reporting
#47
ChrisKeefe
closed
2 years ago
0
NEW: click command for parsing provenance from a filepath
#46
ChrisKeefe
closed
2 years ago
0
Thoughts: Replay UI Options
#45
ChrisKeefe
closed
2 years ago
1
Simplify sample_metadata loading
#44
ChrisKeefe
opened
2 years ago
1
Mandatory replay features
#43
ChrisKeefe
opened
2 years ago
1
efficient replay for multiple interfaces
#42
ChrisKeefe
opened
2 years ago
0
Improve input sanitization
#41
ChrisKeefe
opened
2 years ago
0
Improve support for replay in upstream Usage driver code
#40
ChrisKeefe
opened
2 years ago
1
Adds rough provenance replay
#39
ChrisKeefe
closed
2 years ago
3
ProvDAG should check its own "guaranteed" properties
#38
ChrisKeefe
opened
2 years ago
0
Better error message for non-file-like objects passed to ArtifactParser
#37
ChrisKeefe
opened
2 years ago
0
Think about ProvDAG equality criteria
#36
ChrisKeefe
opened
2 years ago
0
Clean up the `accepted_data_types` implementation in Parsers
#35
ChrisKeefe
opened
2 years ago
0
Make EmptyParser a ParserResultsParser?
#34
ChrisKeefe
opened
2 years ago
0
Dependency-aware node ordering for replay
#33
ChrisKeefe
closed
2 years ago
1
ProvDAG constructor dispatches to parser based on input data type
#32
ChrisKeefe
closed
2 years ago
0
Remove DeprecationWarnings filter (VERSION parser)
#31
ChrisKeefe
opened
2 years ago
1
An algebraic approach to provenance replay
#30
ChrisKeefe
opened
3 years ago
0
A performant approach to loading multiple Results
#29
ChrisKeefe
opened
3 years ago
4
ProvDAG union allows us to merge DAGs
#28
ChrisKeefe
closed
2 years ago
1
Misc items from review with Greg
#27
ChrisKeefe
closed
3 years ago
0
Provdag has a digraph
#26
ChrisKeefe
closed
3 years ago
0
ProvDAG constructor may not support some inherited functions
#25
ChrisKeefe
closed
3 years ago
0
ProvDAG Union
#24
ChrisKeefe
closed
2 years ago
3
ProvDAG refactor
#23
ChrisKeefe
closed
3 years ago
0
Handle in-memory Results
#22
ChrisKeefe
opened
3 years ago
5
Test a .qza?
#21
ChrisKeefe
closed
2 years ago
1
Multiple views of nested provenance
#20
ChrisKeefe
closed
2 years ago
3
Gracefully handle corrupted archives
#19
ChrisKeefe
opened
3 years ago
1
Reorganize and improve Archive validation
#18
ChrisKeefe
closed
3 years ago
0
Rewire ProvDAG to use ProvNodes as nodes
#17
ChrisKeefe
closed
3 years ago
1
Overwrite `artifact_passed_as_metadata` filler type with actual Semantic Types
#16
ChrisKeefe
closed
2 years ago
2
Treat `provenance_is_valid` like an exit code
#15
ChrisKeefe
closed
3 years ago
1
Make checksum validation optional
#14
ChrisKeefe
closed
3 years ago
0
Parse study metadata files
#13
ChrisKeefe
closed
3 years ago
0
Validate checksums
#12
ChrisKeefe
closed
3 years ago
0
Parse metadata
#11
ChrisKeefe
closed
3 years ago
1
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