qiime2 q2-cutadapt issues

qiime2 / q2-cutadapt

BSD 3-Clause "New" or "Revised" License

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issues

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add support for cut-length parameters to trim-* actions

#62 gregcaporaso opened 1 month ago
2
MAINT: add threads/jobs primitives

#61 cherman2 closed 6 months ago
0
Output multiple artifacts per primer, similar to Cutadapt's demultiplexing method

#60 lina-kim opened 10 months ago
4
CI: Updates to ci-dev workflow

#59 hagenjp closed 11 months ago
0
Anchor barcodes during demultiplexing

#58 vaamb closed 9 months ago
8
Expose cutadapt `--cut` option

#57 vaamb closed 10 months ago
15
CI: add additional tests in commands section

#56 lizgehret closed 1 year ago
0
IMP: Allow demultiplexing of mixed orientation reads with dual indices (#55)

#55 vaamb closed 1 year ago
6
ex: adds usage examples for Hacktoberfest

#54 Keegan-Evans closed 1 year ago
0
ex: adds usage examples for Hacktoberfest

#53 Keegan-Evans closed 1 year ago
0
Trimming

#52 IGK-NZ closed 1 year ago
9
dep: rebuild for pandas >=1.2.5

#51 thermokarst closed 2 years ago
0
Fix issue request #49

#50 hyphaltip closed 2 years ago
6
add support for multicore?

#49 hyphaltip closed 2 years ago
7
adding trimming parameters

#48 IGK-NZ closed 2 years ago
2
dep: pin pandas

#47 thermokarst closed 2 years ago
0
ci: update recipe

#46 thermokarst closed 3 years ago
0
ci: library integration

#45 thermokarst closed 3 years ago
0
new: python 3.8

#44 thermokarst closed 3 years ago
0
CI/HACK: cutadapt <3

#43 thermokarst closed 3 years ago
0
DEPS: cutadapt 3

#42 thermokarst closed 3 years ago
1
BUG: prevent mixed orientation overwriting

#41 thermokarst closed 3 years ago
0
Support New Cutadapt Release

#40 andrewsanchez closed 3 years ago
5
Update for cutadapt 3.0

#39 andrewsanchez closed 11 months ago
0
Plugin error from cutadapt:

#37 SerenaGalie closed 4 years ago
1
When called from a shell script, qiime2 is calling the system version of cutadapt, not the qiime version.

#35 JCSzamosi closed 5 years ago
5
Include quality trimming in the q2-cutadapt plugin?

#34 JCSzamosi closed 11 months ago
3
IMP: Allow for demuxing of reads with mixed orientation

#33 Oddant1 closed 4 years ago
4
BUG: demux min length

#32 Oddant1 closed 5 years ago
1
ENH: Support dual index demultiplexing

#31 thermokarst closed 5 years ago
3
BUG: Limit open file-handles

#30 thermokarst closed 5 years ago
0
ENH: Adds `discard_untrimmed` to trim methods

#29 thermokarst closed 5 years ago
0
ENH: Add `minimum_length` param to trim methods

#28 thermokarst closed 5 years ago
0
MAINT: Travis, bump to python 3.6

#27 thermokarst closed 5 years ago
0
MAINT: Updates for python 3.6

#26 thermokarst closed 5 years ago
0
MAINT: Updating copyright headers for 2019

#25 ChrisKeefe closed 5 years ago
0
Update for flake8 v3.6

#24 ChrisKeefe closed 5 years ago
0
BUG: non-alphabetical filenames transposed fwd/rev

#23 ebolyen closed 6 years ago
2
Cutadapt behaving differently inside and outside of qiime2

#22 jcmcnch closed 6 years ago
1
DOC: add citation

#21 ebolyen closed 6 years ago
0
Add citations

#20 ebolyen closed 6 years ago
0
Convert --verbose stats to visualization

#19 ebolyen opened 6 years ago
3
Too many open files

#18 thermokarst closed 5 years ago
13
Expose --m (min output read length) parameter

#17 thermokarst closed 5 years ago
4
`trim-single`: accept `SampleData[JoinedSequencesWithQuality]`

#16 nbokulich opened 6 years ago
4
ENH: Update docs to clarify linked primers

#15 thermokarst closed 6 years ago
0
MAINT: new Metadata updates

#14 jairideout closed 6 years ago
0
Add Log Ouput

#13 michoug closed 6 years ago
1
MAINT: update copyright year; travis

#12 ebolyen closed 6 years ago
0