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qiime2
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q2-diversity-lib
BSD 3-Clause "New" or "Revised" License
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BUG: faith PD vector retains #SampleID index name
#67
lizgehret
closed
3 months ago
1
MAINT: moves skbio methods to separate subdir with copyright info
#66
lizgehret
closed
5 months ago
2
merge updates from dev (take 2)
#65
lizgehret
closed
5 months ago
0
maint: make sure Language branch is up to date w/dev
#64
lizgehret
closed
5 months ago
0
MAINT: hardcoded skbio metrics to temporarily work around NaN to 0 implementation
#63
hagenjp
closed
5 months ago
2
MAINT: add threads/jobs primitives
#62
colinvwood
closed
8 months ago
0
add relative frequency as input to bray curtis
#61
colinvwood
closed
11 months ago
2
adding relative-freq table as input for bray-curtis
#60
cherman2
closed
11 months ago
1
CI: Updates to ci-dev workflow
#59
hagenjp
closed
1 year ago
0
CI: add additional tests in commands section
#58
Oddant1
closed
1 year ago
0
BUG: After 2022.8 faith_pd_vector.qza comes with a #SampleID index/column name
#57
mestaki
closed
3 months ago
9
ci: force re-render, will this work?
#56
lizgehret
closed
1 year ago
0
ci: re-render without unifrac pin
#55
lizgehret
closed
1 year ago
0
ci: re-render (again) with unifrac/unifrac_binaries update
#54
lizgehret
closed
1 year ago
0
ci: force re-re-render
#53
lizgehret
closed
1 year ago
0
ci: force re-render... again
#52
lizgehret
closed
1 year ago
0
ci: force re-render again
#51
lizgehret
closed
1 year ago
0
ci: force re-render for new skbio version
#50
lizgehret
closed
1 year ago
0
PIN: use global scipy pin
#49
ebolyen
closed
2 years ago
0
dep: rebuild for skbio 0.5.7; pandas > 1.2.5; biom-format >=2.1.12
#48
thermokarst
closed
2 years ago
0
imp/bug: utilize new unifrac OMP support
#47
thermokarst
closed
2 years ago
3
dep: pin skbio, pandas, and biom
#46
thermokarst
closed
2 years ago
0
UniFrac and Faith's PD citations
#45
wasade
closed
2 years ago
0
Unifrac cites
#44
wasade
closed
2 years ago
1
Sparse alpha
#43
wasade
closed
11 months ago
19
Alpha diversity operates on dense feature tables
#42
wasade
closed
11 months ago
0
DO NOT MERGE: testing something out
#41
thermokarst
closed
2 years ago
0
dep: unset hdf5 pin
#40
thermokarst
closed
2 years ago
0
Adds Usage Examples
#39
ChrisKeefe
closed
2 years ago
0
dep: pin unifrac
#38
thermokarst
closed
2 years ago
0
dep: drop hdf5 pin
#37
thermokarst
closed
2 years ago
0
Alpha diversity as sparse or on smaller dense tables
#36
wasade
closed
2 years ago
3
ci: update recipe
#35
thermokarst
closed
3 years ago
0
ci: library integration
#34
thermokarst
closed
3 years ago
0
MAINT: conda recipe updates to include python under run reqs
#33
lizgehret
closed
3 years ago
0
new: python 3.8
#32
thermokarst
closed
3 years ago
0
maint: remove pandas deprecation
#31
Keegan-Evans
closed
3 years ago
1
beta-phylogenetic-meta-passthrough: work with relative frequency and presence/absence table
#30
thermokarst
opened
3 years ago
0
MAINT: pluralize meta inputs
#29
thermokarst
closed
3 years ago
0
CI: update action-library-packaging
#28
thermokarst
closed
3 years ago
0
Allow Bray-Curtis to accept Relative Frequency Data
#27
ChrisKeefe
closed
11 months ago
1
Exposing unifrac.meta
#26
wasade
closed
3 years ago
8
ENH: suports wiring up q2-diversity's alpha, beta, a/b_phylo, and a/b_rarefaction
#24
ChrisKeefe
closed
4 years ago
1
CI: action-library-packaging build-target
#23
thermokarst
closed
4 years ago
0
ENH: Provide dispatch functions for q2-diversity
#22
ChrisKeefe
closed
4 years ago
0
Ports alpha, beta, and associated _phylogenetic calls to diversity-lib
#21
ChrisKeefe
closed
4 years ago
5
Remove psutil patches from `test_util.py` "through-the-framework" tests
#20
ChrisKeefe
opened
4 years ago
1
DEBUG: get psutil's cpu interpretations
#19
thermokarst
closed
4 years ago
0
BUG: Multiple values for 'n_jobs' or 'threads'
#18
ChrisKeefe
closed
4 years ago
5
TODO: update Faith's PD method to use unifrac-based impl
#17
thermokarst
closed
4 years ago
1
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