qiime2 q2-gneiss issues

qiime2 / q2-gneiss

QIIME2 plugin for Gneiss

BSD 3-Clause "New" or "Revised" License

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issues

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CI: add additional tests in commands section

#84 Oddant1 closed 1 year ago
0
ci: force re-render for skbio update

#83 lizgehret closed 1 year ago
0
MAINT/hack: update gradient_linkage for scipy 1.9

#82 ebolyen closed 1 year ago
0
ci: force re-render again

#81 lizgehret closed 1 year ago
0
ci: force re-render for skbio update

#80 lizgehret closed 1 year ago
0
dep: pandas >=1.2.5, biom 2.1.12, skbio 0.5.7

#79 thermokarst closed 2 years ago
0
dep: pin skbio, pandas, and biom

#78 thermokarst closed 2 years ago
0
ci: update recipe

#77 thermokarst closed 3 years ago
0
ci: library integration

#76 thermokarst closed 3 years ago
0
WIP: ILR transform on tensors

#75 mortonjt closed 1 year ago
7
Adding support for FeatureTensor types

#74 mortonjt opened 3 years ago
1
new: python 3.8

#73 thermokarst closed 3 years ago
1
Built in support for tax2tree

#72 mortonjt opened 4 years ago
0
Ilr ordination

#71 mortonjt closed 3 years ago
10
ILR ordination plots

#70 mortonjt opened 4 years ago
0
Revert removed visualization

#69 andrewsanchez closed 4 years ago
0
MAINT: Remove deprecated actions

#67 thermokarst closed 4 years ago
1
Remove deprecated actions

#66 thermokarst closed 4 years ago
0
MAINT: update for pandas 0.25.1

#65 ebolyen closed 4 years ago
2
BUG: Raise exception when samples in table not present in metadata

#64 Oddant1 closed 5 years ago
0
MAINT: Deprecating visualizers

#63 thermokarst closed 5 years ago
1
use tight layout to avoid cutting off long labels in plots

#62 nbokulich closed 5 years ago
1
BUG: balance_boxplots long y-axis labels get trimmed

#61 nbokulich closed 5 years ago
0
BUG: Improve error message raised in #59

#60 Oddant1 closed 5 years ago
2
numerical values encoded as categories can raise error

#59 mortonjt closed 5 years ago
0
pvalues disagree between interactive plot

#58 mortonjt opened 5 years ago
2
MAINT: Travis, bump to python 3.6

#57 thermokarst closed 5 years ago
0
MAINT: Updates for python 3.6

#56 thermokarst closed 5 years ago
1
FIX: fixing ilr transform match tips in ilr-phylogenetic

#54 mortonjt closed 5 years ago
2
Match tips

#53 mortonjt closed 5 years ago
0
Update for flake8 v3.6

#52 ChrisKeefe closed 5 years ago
0
Error in gneiss tutorial

#51 emankhalaf closed 5 years ago
2
Making the FeatureTable[Composition] optional in ilr transform

#50 mortonjt closed 6 years ago
3
IMP: correlation_clustering input now freq

#49 ebolyen closed 6 years ago
2
Ditch the composition

#48 mortonjt closed 6 years ago
4
Add pseudocount parameter to visualizations

#47 mortonjt closed 6 years ago
1
DOC: Updating docs for the regression summary

#46 mortonjt closed 6 years ago
2
Updating docs for the regression summaries

#45 mortonjt closed 6 years ago
0
Proportion plots can be misleading with few features

#44 mortonjt opened 6 years ago
0
added ilr-phylogenetic and merged add-pseudocount

#43 qiyunzhu closed 6 years ago
7
Update descriptions of _regression.py

#42 lisa55asil closed 6 years ago
9
Split ilr-transform into two commands

#41 mortonjt closed 6 years ago
2
BUG: fixed tests broken by upgrade to statsmodels 0.9.0

#40 nbokulich closed 6 years ago
1
statsmodels 0.9.0 appears to break existing tests

#39 thermokarst closed 6 years ago
3
fixed typo

#38 nbokulich closed 6 years ago
1
Typo in correlation-clustering table parameter text

#37 thermokarst closed 6 years ago
0
Cleaner metadata categories in dendrogram heatmap

#36 mortonjt opened 6 years ago
0
BUG: fixed citations

#35 nbokulich closed 6 years ago
0