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qiime2
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q2cli
Command line interface for QIIME 2
BSD 3-Clause "New" or "Revised" License
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Parsl
#294
Oddant1
closed
1 year ago
1
Pipeline resumption
#293
Oddant1
closed
1 year ago
1
Pipeline resumption
#292
Oddant1
closed
1 year ago
1
FEAT: qiime tools show-types and qiime tools show-formats commands
#291
colinvwood
closed
1 year ago
2
IMP: differentiate stdout between cache entry and file output
#290
colinvwood
closed
1 year ago
0
Output collections
#288
Oddant1
closed
1 year ago
1
`qiime tools import --show-importable-formats` => add format descriptions
#289
nick-youngblut
closed
1 year ago
2
SQUASH: Rename tools and args
#287
Oddant1
closed
1 year ago
0
SQUASH: Temporarily remove cache-valiate
#286
Oddant1
closed
1 year ago
0
stdout on creation of artifact cache entry
#285
gregcaporaso
closed
1 year ago
1
View in cache
#284
Oddant1
closed
1 year ago
1
SQUASH: Need to with in the cache for validate b/c we load artifacts w…
#283
Oddant1
closed
1 year ago
3
bug: adds user permissions in cache testing for osx
#282
lizgehret
closed
1 year ago
0
Cache cli output dir
#281
Oddant1
closed
1 year ago
1
IMP: allow qiime tools peek to take multiple arguments, add tsv flag
#280
colinvwood
closed
1 year ago
3
allow qiime tools peek to take multiple arguments
#279
gregcaporaso
closed
1 year ago
1
NEW: Start adding cache tools to the cli
#278
Oddant1
closed
1 year ago
1
NEW: First pass at cli for cache
#277
Oddant1
closed
1 year ago
7
HACK: fix List[Bool] types (found by mystery-stew)
#276
ebolyen
closed
2 years ago
2
BUG: fix namespace collision when names differ
#275
ebolyen
closed
2 years ago
1
BUG: class view_type in Usage.import_from_format
#274
ebolyen
closed
2 years ago
1
Minor tweaks impacting usage
#273
ChrisKeefe
closed
2 years ago
1
TST: fix issue with view_as_metadata and mystery-stew
#272
ebolyen
closed
2 years ago
1
BUG: fix Usage.view_as_metadata
#271
ebolyen
closed
2 years ago
1
maint: rounding out usage api
#270
thermokarst
closed
2 years ago
0
maint: usage driver cleanup
#269
thermokarst
closed
2 years ago
1
MAINT: finalizing new result-testing builtins
#268
lizgehret
closed
2 years ago
5
maint: usage v2
#267
thermokarst
closed
2 years ago
0
IMP: use bright_blue color for cmd/opt
#266
ebolyen
closed
2 years ago
3
BUG: q2cli usage handing bad typestrings to framework for TypeMaps
#265
ChrisKeefe
closed
2 years ago
1
BUG: q2cli usage handing bad type expressions to framework when TypeMap
#264
ChrisKeefe
closed
2 years ago
1
ci: update recipe
#263
thermokarst
closed
3 years ago
0
ci: library integration
#262
thermokarst
closed
3 years ago
0
FEAT: q2cli cast metadata tool
#261
lizgehret
closed
3 years ago
0
dep: click8 support
#260
thermokarst
closed
2 years ago
6
Update to click==8.0.0 breaks cache refresh on 2021.8.dev
#259
misialq
closed
2 years ago
1
fix: issues revealed by mystery stew
#258
andrewsanchez
closed
2 years ago
0
Alternative boolean representation
#257
thermokarst
opened
3 years ago
1
BUG: resolved tab auto-complete in zsh
#256
lizgehret
closed
3 years ago
0
ZSH 5.8 Tab Completion Error When Activating QIIME2 Environment
#255
lizgehret
closed
3 years ago
4
Suggestion: Remove dependency on Python 'click' module
#254
michaelkarlcoleman
closed
11 months ago
2
new: python 3.8
#253
thermokarst
closed
3 years ago
0
refactor: usage renderer logic is now fully priv
#252
thermokarst
closed
3 years ago
4
Installed qiime2 but getting SyntaxError: invalid syntax error
#251
Calvin2077
closed
3 years ago
2
BUG: Remove * from records.
#250
andrewsanchez
closed
3 years ago
1
report some additional information on export of artifacts
#249
gregcaporaso
opened
4 years ago
1
Implement CLIUsage._assert_has_line_matching_
#247
thermokarst
closed
11 months ago
0
Refactor cache
#246
thermokarst
closed
4 months ago
1
Expose `--examples` flag at the plugin level
#245
thermokarst
opened
4 years ago
0
Implement an `--example-data` flag
#244
thermokarst
closed
11 months ago
1
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