Option to print just CDR3s

[sinkovit]

When creating very large synthetic repertoires, sometimes we want to save space and generate just the CDR3s. I found a way to modify the code to comment out the lines that write out the full sequences (lines 542 and 612 in the version of GenModel.cpp from late February)

outfile_ind_seq<<seq<<";"<<sequence.first<<endl; outfile_ind_seq<<index<<";"<<(*iter).first<<endl;

Would it be possible to add a command line option to control this behavior (e.g. --no_full_seq or --crd3_only)?

[qmarcou]

Hi @sinkovit , Yes that should be doable, I'll try and add a more general command line argument to select desired output features

[sinkovit]

Thank you, this is much appreciated.

-- Bob

From: qmarcou notifications@github.com Reply-To: qmarcou/IGoR reply@reply.github.com Date: Saturday, August 25, 2018 at 12:14 PM To: qmarcou/IGoR IGoR@noreply.github.com Cc: "Sinkovits, Robert" sinkovit@sdsc.edu, Mention mention@noreply.github.com Subject: Re: [qmarcou/IGoR] Option to print just CDR3s (#15)

Hi @sinkovithttps://github.com/sinkovit , Yes that should be doable, I'll try and add a more general command line argument to select desired output features

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