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qmarcou / IGoR

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
https://qmarcou.github.io/IGoR/
GNU General Public License v3.0
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Missing unknown subargument error for -output #54

Closed jeremycfd closed 4 years ago

jeremycfd commented 4 years ago

Embarrassed to say I spent more time than I will admit trying to figure out why the -output --pgen option was not producing a Pgen_counts.csv file before I finally realized that the command is case-sensitive -output --Pgen. Might be worthwhile to report errors when oblivious people like me include subargs and subsubargs that don't exist!

qmarcou commented 4 years ago

Hi @jeremycfd, Sorry about that and thanks for pointing it out! It seems I have indeed forgotten the unknown argument clause on this one... I'll fix it now and check that I have not forgotten another one elsewhere.