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qmarcou / IGoR

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
https://qmarcou.github.io/IGoR/
GNU General Public License v3.0
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the result file foo_indexed_CDR3s.csv #66

Open shwdmsh opened 3 years ago

shwdmsh commented 3 years ago

Hi,when I used the align command as follows(using the demo data murugan_naive1_noncoding_demo_seqs.txt): igor -set_wd $WDPATH -batch foo -species human -chain beta -align --all Then I got the result foo_indexed_CDR3s.csv,However the context in file as follows:

seq_index;v_anchor;j_anchor;CDR3nt;CDR3aa 0;0;0;; 0;0;0;; 0;0;0;; 0;0;0;; 0;0;0;; 0;0;0;; 0;0;0;; 0;0;0;; 0;0;0;;

Is the result correct ? If not, how to do ? Waiting for your help!

ArteEfs commented 8 months ago

Hi, I am currently facing the same problem. Any chance you've managed to fix it? Would be very grateful for any tips. Kind regards