Closed bhagesh-h closed 2 weeks ago
Thanks for the report
Thanks for report. Unfortunately, as is, we can't use it.
Note that we are asking a reproducible example because without it's very unlikely we'll be able to guess what is wrong.
For instance, you did not provide the content of the Quarto document. You shared the quarto check
output for Quarto 1.5.56 but the sif image displays quarto_v1_4_553.sif
.
Also, when trying to debug, you should try a small and simple document which is not the case based on the Quarto command you shared (see examples below).
Could you share a small self-contained "working" (reproducible) example to work with, i.e., a complete Quarto document or a Git repository? The goal is to make it as easy as possible for us to recreate your problem so that we can fix it: please help us help you! Thanks.
You can share a self-contained "working" (reproducible) Quarto document using the following syntax, i.e., using more backticks than you have in your document (usually four ````
).
See https://quarto.org/bug-reports.html#small-is-beautiful-aim-for-a-single-document-with-10-lines.
If you have multiple files (and if it is absolutely required to have multiple files), please share as a Git repository.
R | Python |
---|---|
`````md ````qmd --- title: "Reproducible Quarto Document" format: html engine: knitr --- This is a reproducible Quarto document. {{< lipsum 1 >}} ```{r} x <- c(1, 2, 3, 4, 5) y <- c(1, 4, 9, 16, 25) plot(x, y) ``` ![An image]({{< placeholder 600 400 >}}){#fig-placeholder} {{< lipsum 1 >}} The end after @fig-placeholder. ```` ````` | `````md ````qmd --- title: "Reproducible Quarto Document" format: html engine: jupyter --- This is a reproducible Quarto document. {{< lipsum 1 >}} ```{python} import matplotlib.pyplot as plt x = [1, 2, 3, 4, 5] y = [1, 4, 9, 16, 25] plt.plot(x, y) plt.show() ``` ![An image]({{< placeholder 600 400 >}}){#fig-placeholder} {{< lipsum 1 >}} The end after @fig-placeholder. ```` ````` |
Additionally and if not already given, please share the output of quarto check
within a code blocks (i.e., using three backticks ```txt
), see https://quarto.org/bug-reports.html#check.
For reference and information:
thank you @mcanouil , I have updated the query above with examples and corrected singularity version.
Thank you for using Quarto and reporting an issue!
Unfortunately, this issue is now considered stale because it has been opened since 14 days without providing a "working" reproducible example to help us investigate. If you are still facing the issue, please review the "Bug Reports" guide on how to provide a fully reproducible example as a self-contained Quarto document or a link to a Git repository. Without a reproducible example, it is unlikely that the issue will be addressed.
You can share a Quarto document using the following syntax, i.e., using more backticks than you have in your document (usually four ````
).
````qmd
---
title: "Reproducible Quarto Document"
format: html
---
This is a reproducible Quarto document using `format: html`.
It is written in Markdown and contains embedded R code.
When you run the code, it will produce a plot.
```{r}
plot(cars)
The end.
Unfortunately, we can't really help you here, since we're not singularity users nor do we have the time to learn it.
Bug description
I am trying to run quarto via singularity, and received
KeyError: 'kernel_dirs'
when I run a quarto check and the same while running quarto render.please find complete error below
Steps to reproduce
_metadata.yaml
contentreport.qmd
content::: callout-note
Project Details
Project ID:
{python} project_id
\ Date of Processing: {{< meta date >}}\ Pipeline:{python} pipeline
\ Version:{python} version
:::References {.unnumbered}
::: {#refs} :::
{.unnumbered .unlisted}
SOME TEXT {.unnumbered .unlisted .center}
quarto commands
Expected behavior
No response
Actual behavior
No response
Your environment
Quarto check output
Error: