Labeling of gt-tables is broken

[snhansen]

Bug description

With the newest Quarto version (1.4.84) on Windows, I now get an error when trying to label a table created with gt(). A minimal example:

---
format: html
---

# Title

```{r}
#| echo: false
#| tbl-cap: "Caption."
#| label: tbl-test
library(gt)

gt(mtcars)
```

which results in this error:

Error running filter C:/Users/au234616/AppData/Local/Programs/Quarto/share/filters/main.lua:
...616/AppData/Local/Programs/Quarto/share/filters/main.lua:9301: attempt to call a string value (field 'html_table_caption')
stack traceback:
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:9139: in local 'fn'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:2120: in function <...616/AppData/Local/Programs/Quarto/share/filters/main.lua:2114>
        (...tail calls...)
        [C]: in ?
        [C]: in method 'walk'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:178: in function 'run_emulated_filter'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:566: in local 'callback'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:577: in upvalue 'run_emulated_filter_chain'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:610: in function <...616/AppData/Local/Programs/Quarto/share/filters/main.lua:607>
stack traceback:
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:178: in function 'run_emulated_filter'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:566: in local 'callback'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:577: in upvalue 'run_emulated_filter_chain'
        ...616/AppData/Local/Programs/Quarto/share/filters/main.lua:610: in function <...616/AppData/Local/Programs/Quarto/share/filters/main.lua:607>

Checklist

• [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
• [X] Please format your issue so it is easier for us to read the bug report.
• [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
• [X] Please document the operating system you're running. If on Linux, please provide the specific distribution.
• [ ] Please provide the output of quarto check so we know which version of quarto and its dependencies you're running.

[mcanouil]

Thanks for the report!

I can reproduce on the latest development version. The issue is not with the labels, but the caption.

For example, the following works:

---
format: html
---

```{r}
#| label: tbl-cars
library(gt)
gt(mtcars)

I believe it's related to #5551 changes regarding the overhaul "refactoring" of the cross-reference feature (#4944).

[mcanouil]

Side note, should some tests be added for gt? As for knitr-tables-latex.qmd and knitr-tables.qmd

[cderv]

Side note, should some tests be added for gt?

I believe it is tracked by @rich-iannone and he plans to add some (if not already) on gt side to cover a vast variations of tables.

Also we have some basic tests in our smoke-all part (Drawback of the smoke-all folder is that they are not organized by topic. We could regroup. ):

• https://github.com/quarto-dev/quarto-cli/blob/85ff02310361516109a64c66e22bc44be9a865ae/tests/docs/smoke-all/2023/02/08/4272.qmd
• https://github.com/quarto-dev/quarto-cli/blob/a0c28d80297e00081c422a3a765c55d0b7e78b0e/tests/docs/smoke-all/2023/03/14/issue-1093.qmd
• https://github.com/quarto-dev/quarto-cli/blob/3c88916cb5e73de0ec30b031e438342ab7939b01/tests/docs/smoke-all/2023/02/25/issue-4316.qmd

It seems they are passing as we did not detect the issue before 🤔

[cderv]

It seems they are passing as we did not detect the issue before 🤔

This in fact gave us the hint that it is an issue with gt - we are not testing with gt 0.8 and now 0.9 is out.

So issue is with gt 0.9 - @snhansen installing gt 0.8 solve the issue for me, so my guess is that you are using 0.9 too.

Using Quarto 1.3 works with both version.

@rich-iannone FYI as related to gt

[snhansen]

@cderv: Ah, yes. Same behaviour here. Didn't occur to me that it could be related to gt.

[cscheid]

It's still a quarto bug; we shouldn't be crashing at all. Let me investigate.

[cscheid]

The issue is not with gt; it's that our tests were not covering crossref/tables.lua:196. It was a typo.

I've tested a local fix with gt 0.9.0, but I'm not sure how to make our test suite cover multiple R package versions.

[mcanouil]

What changed in gt that lead Quarto to error out here? The only way I know is to use renv profiles or similarly different lockfile (renv or pak) which record different version of the packages.

[mcanouil]

The main "issue" is what packages and how many version to you want to test against? Should Quarto really be compatible with possibly any versions of any packages? Or should any Quarto release worked with the latest release of the packages?

[cscheid]

I found a workaround; I used the 0.9.0 output directly on the qmd input. That triggered the bug independently of the library.

Should Quarto really be compatible with possibly any versions of any packages?

That's not the point here, because this isn't a GT bug. This was literally me using foo() instead of foo on a string value. It only happened that the bug triggered on 0.9.0 because the html formatting changed and it started exercising that specific code path.

[cscheid]

In any case, sorry for the bug! We have a fix and regression test now.