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rbchan
/
unmarked
R package for hierarchical models in ecological research
https://rbchan.github.io/unmarked/
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occuMS: only drop site/observation if the missing covariate is actually used in a formula
#181
kenkellner
closed
4 years ago
0
Convert characters to factors with warning when building umf
#180
kenkellner
closed
4 years ago
0
Factors and data.frames in R 4.0
#179
mikemeredith
closed
4 years ago
11
Missing values in occuMS site covs cause issues in some situations
#178
kenkellner
closed
4 years ago
0
Fix LTO errors
#177
kenkellner
closed
4 years ago
0
Allow predicting co-occurrence probabilities in occuMulti
#176
kenkellner
closed
4 years ago
1
Update package authors
#175
kenkellner
closed
4 years ago
1
Make namespace more explicit, avoid unnecessarily package loads
#174
kenkellner
closed
4 years ago
3
Consider distinction between package authors and collaborators
#173
kenkellner
closed
4 years ago
5
Don't warn when predicting from model where a factor present in covariates is not in the model
#172
kenkellner
closed
4 years ago
3
Fix simulate() to work with multinomial distributions when there are missing values
#171
kenkellner
closed
4 years ago
1
Adds predict method for unmarkedRanef class
#170
kenkellner
closed
4 years ago
5
Add multmixOpen() function
#169
kenkellner
closed
4 years ago
1
Warnings when predicting when factors are present in the siteCovs but not used in the model formula
#168
kenkellner
closed
4 years ago
0
Add distsampOpen function
#167
kenkellner
closed
4 years ago
5
Add predict methods for 'unmarkedRanef' class.
#166
rbchan
closed
4 years ago
0
Fix CRAN warnings by manually specifying stringsAsFactors=TRUE in a few places
#165
kenkellner
closed
4 years ago
0
Make it easer to calculate probability of species co-occurrence using occuMulti predict()
#164
kenkellner
closed
4 years ago
0
simulate method for unmarkedFitGDS fails when there are NAs in siteCovs
#163
kenkellner
closed
4 years ago
0
Use common function for inverting Hessian
#162
kenkellner
closed
4 years ago
0
Remove reshape2 dependency
#161
kenkellner
closed
4 years ago
0
A few more tests for fixing predict
#160
kenkellner
closed
4 years ago
0
Handle functions in formulas and missing factor levels in occuMS predict
#159
kenkellner
closed
4 years ago
0
Improve handling of formulas in occuMulti predict
#158
kenkellner
closed
4 years ago
1
Update prediction methods to allow functions in the formula
#157
aosmith16
closed
4 years ago
1
Add maxOrder argument to unmarkedFrameOccuMulti, fixes #136
#156
kenkellner
closed
4 years ago
0
predict can fail when formula contains poly(), bs(), scale(), etc...
#155
rbchan
closed
4 years ago
5
Added makePiFuns
#154
mikemeredith
closed
4 years ago
1
Remove duplicated parboot code
#153
kenkellner
closed
4 years ago
0
Fix broken example and some other `class(.) == *` situations
#152
kenkellner
closed
4 years ago
1
colext example fails under R 4.0
#151
kenkellner
closed
4 years ago
1
Add `ncores` option to `parboot`
#150
adamdsmith
closed
4 years ago
0
Add 'coresToUse' argument to 'parboot'
#149
mikemeredith
closed
4 years ago
9
fitList validity testing now works with all fit types
#148
kenkellner
closed
4 years ago
2
Can't make fitList from occuFP models
#147
kenkellner
closed
4 years ago
8
Allow custom stats functions and parallel processing in crossVal
#146
kenkellner
closed
4 years ago
1
Clean up unused C++ code and address minor compiler warnings
#145
kenkellner
closed
4 years ago
0
Fit time-to-detection occupancy models
#144
kenkellner
closed
4 years ago
2
Add support for cloglog link function in occu
#143
kenkellner
closed
4 years ago
0
cloglog link function option for occu()
#142
kenkellner
closed
4 years ago
2
Add function to calculate VIFs
#141
kenkellner
closed
4 years ago
0
Allow model-averaged predictions with RasterStacks as newdata
#140
kenkellner
closed
4 years ago
0
Implements fitting function for single-season and dynamic multi-state occupancy models
#139
kenkellner
closed
4 years ago
1
Fix bug with predict and occuMulti when newdata only has one row
#138
kenkellner
closed
5 years ago
1
Allow use of site covariates in detection formulas in occuMulti
#137
kenkellner
closed
5 years ago
0
Add maxOrder argument to unmarkedFrameOccuMulti
#136
kenkellner
closed
4 years ago
1
Use trapezoidal rule instead of Rdqags for approximating integrals
#135
kenkellner
closed
4 years ago
0
Compiler conflicts in C++ code for gdistsamp
#134
kenkellner
closed
4 years ago
2
Handle fixed parameters in pcountopen simulate and fitted
#133
kenkellner
closed
5 years ago
0
Update tests to reflect changes to sample() in R 3.6.0
#132
kenkellner
closed
5 years ago
0
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