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rdk
/
p2rank
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
https://rdk.github.io/p2rank/
MIT License
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exception in phase 'semantic analysis' in source unit
#75
veronicagamo
opened
2 weeks ago
1
Fail or at least warn users if they try to use wrong combiation of (command,config,model)
#73
rdk
opened
3 months ago
0
Rescoring of cif files generated by fpocket fails
#72
Yorick-126
closed
2 weeks ago
11
incomplete test_output
#71
SusuSui
closed
5 months ago
4
Different results compared to PrankWeb?
#70
AlexLam37
opened
5 months ago
1
data input rescore
#69
ClaraVanM
opened
6 months ago
7
Pocket Volume Estimations
#68
apl22
opened
7 months ago
2
installation not clear
#67
Canddya
closed
11 months ago
0
Use Silent instead of Data
#66
egonw
closed
11 months ago
1
Question about the preprocessing of PDB file.
#65
violet-sto
closed
6 months ago
1
No CSV output?
#63
lazear
closed
1 year ago
7
No SLF4J providers were found!
#62
amarye
closed
1 year ago
5
Dataset contains invalid files
#61
amarye
closed
1 year ago
2
Stop Logging to Distribution Directory
#60
lilleswing
closed
1 year ago
1
[SUGGESTION] Release Binary Should Log To STDERR instead of to install directory
#59
lilleswing
closed
1 year ago
1
File path in *.ds file
#58
JinyuanSun
closed
1 year ago
3
dataset-joined pdb_residues file doesn`t match with fasta sequence
#57
ProkopDivin
opened
2 years ago
0
installation not clear?
#56
ghost
closed
3 months ago
13
Out of memory error
#55
AndreaSoltes
closed
5 months ago
1
Issue with loading mmCIF files created in PyMOL
#54
davidhoksza
closed
3 months ago
4
easy way to get features
#53
rohanvarm
opened
2 years ago
2
Building on WSL failing
#52
davidhoksza
closed
2 years ago
2
Output directory parameter `-o` is sometimes ignored.
#50
rdk
closed
3 years ago
1
Bug in -conservation_dirs argument parsing
#49
davidjakubec
closed
3 years ago
2
Extend and reorganize documentation
#48
rdk
opened
3 years ago
0
Add README section abut P2Rank framework
#47
rdk
opened
3 years ago
0
Add probability to output *_predictions.csv file
#46
rdk
closed
3 years ago
1
Make p2rank behave more like a standard unix program by default (wrt output location and working directory)
#45
rdk
opened
3 years ago
3
Java options unrecognized by OpenJDK 15
#44
davidhoksza
closed
3 years ago
1
Any idea why there is a difference?
#43
skodapetr
opened
4 years ago
0
Add README section about running dockerized version
#42
davidhoksza
opened
4 years ago
0
Does p2rank require git ?
#41
skodapetr
closed
3 years ago
1
What are best practices to generating docking gridboxes from P2R points?
#40
5xx7xx
closed
4 years ago
2
Log output change
#39
skodapetr
closed
4 years ago
2
Feature implementation not found: conserv
#38
skodapetr
closed
3 years ago
3
failFast for conservation
#37
skodapetr
closed
3 years ago
1
Improve behaviour - wrong parameters
#36
sykoram
closed
3 years ago
2
ResidueNumberWrapper ignore chain ?
#35
skodapetr
closed
3 years ago
3
Implement csv-feature
#34
skodapetr
closed
4 years ago
6
How to train with conservation (Add parameter -conservation_dir_train)
#33
skodapetr
closed
3 years ago
5
Use dot as decimal separator regardless of locale
#32
skodapetr
closed
4 years ago
1
Thread count limitation
#31
skodapetr
closed
4 years ago
3
How does predict-eval work
#30
skodapetr
closed
4 years ago
4
Invalid format and content of runs_pred.csv
#29
skodapetr
closed
4 years ago
0
hyperparameter optimization tutorial
#28
skodapetr
closed
3 months ago
3
Note should not be in the text
#27
skodapetr
closed
4 years ago
1
Case-study to extra file
#26
skodapetr
closed
4 years ago
1
Fpocket in tutorial
#25
skodapetr
closed
4 years ago
1
What is a huge dataset?
#24
skodapetr
closed
3 years ago
1
PyMOL output file names are not quoted
#22
davidhoksza
closed
4 years ago
1
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