rdpstaff / RDPTools

Collection of commonly used RDP Tools for easy building
49 stars 52 forks source link

make issues #11

Closed peterthorpe5 closed 8 years ago

peterthorpe5 commented 8 years ago

Dear rdp-tools, I have problem with (2015_june_02 downloaded) rdp-tools "make", this break fairly instantly. See what I did below:

$ git clone https://github.com/rdpstaff/RDPTools.git $ cd RDPTools $ git submodule init $ git submodule update $ make ant -f Clustering/build.xml jar make: execvp: ant: Permission denied make: *\ [Clustering/dist/Clustering.jar] Error 127

I am sorry if this is a daft squestion, but I am lost as to how to proceed. I dont have admin rights, so no sudo.. This is all the error produces. Any thoughts?

Kind regards,

Peter Thorpe

rdpstaffmsu commented 8 years ago

Hi Peter,

Since you don't have root privileges, you have two options. First option is to talk the systems admin of computer system to help you install. If that can't be possible, we can try option two.

Option two is to install "apache ant" in a directory where you have full access.

run these commands below (In these instructions, $ means shell command):

  1. $wget http://mirror.reverse.net/pub/apache//ant/binaries/apache-ant-1.9.7-bin.zip
  2. $unzip apache-ant-1.9.7-bin.zip
  3. $cd apache-ant-1.9.7/bin
  4. $pwd

copy the entire directory address

  1. $cd ~
  2. $vi .bashrc

In the file .bashrc, add the line below.

export PATH="path/to/apache-ant-1.9.7/bin":${PATH} save the file

  1. $source .bashrc

If you have any question, let me know.

Santosh

On Thu, Jun 2, 2016 at 9:06 AM, Peter Thorpe notifications@github.com wrote:

Dear rdp-tools, I have problem with rdp-tools "make", this break fairly instantly. See what I did below:

$ git clone https://github.com/rdpstaff/RDPTools.git $ cd RDPTools $ git submodule init $ git submodule update $ make ant -f Clustering/build.xml jar make: execvp: ant: Permission denied make: *\ [Clustering/dist/Clustering.jar] Error 127

I am sorry if this is a daft squestion, but I am lost as to how to proceed. I dont have admin rights, so no sudo.. This is all the error produces. Any thoughts?

Kind regards,

Peter Thorpe

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/rdpstaff/RDPTools/issues/11, or mute the thread https://github.com/notifications/unsubscribe/AKlEVm5fJSOQ3HU1w4xUtnyKJ-CiEDvLks5qHtVAgaJpZM4IsiIU .

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

peterthorpe5 commented 8 years ago

Thank you very much for your reply. It was very helpful.:)

Issue closed. Cheers,

Pete