Metaproject for RDP Tools
This project includes the modules from the RDP (Classifier, Clustering, SequenceMatch, ProbeMatch, InitialProcessing, FrameBot, ReadSeq, Xander) and all their dependencies. Don't click "Download ZIP" button, instead, copy the cloneURL and type git clone cloneURL
After cloning this repository enter the commands
$ git submodule init $ git submodule update
then type 'make'
Jars are placed in the main directory, you can run them with
java -jar classifier.jar|Clustering.jar|...
Building depends on 'make' and 'ant 1.9'.
$ git pull $ git submodule update $ make clean $ make
The RDP Paired-end Reads Assembler used in the publication (Cole et al., 2014 Nucl. Acids Res.) is available at http://rdp.cme.msu.edu/misc/resources.jsp
See each individual tool page or fungene_pipeline (https://github.com/rdpstaff/fungene_pipeline) to run one or multiple tools.