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Hi,
I am trying to run AliTV for three plant genomes (same species but different sub-species). the genomes have been assembled using HifiAsm. As they are from the same species the sequences have long…
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## Sider bar issues - selected sequences & share results white spacing
### Original
![image](https://github.com/user-attachments/assets/af0c6bcf-d8a7-4b08-8290-f6306946446a)
### Update
![image](…
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Hello,
I'm getting the following error as shown below when running on a series of bam files. Bam files we're generated by mapping to a consensus sequence generated from an initial alignment
`T…
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Write down some details about deduplicating sample sequences and MAFFT alignment (version and options).
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I would like to propose adding the option to use the "Fast Optimal Global Sequence Alignment Algorithm" (FOGSAA) [1] both for pairwise and multiple sequence alignments. Given that FOGSAA provides alig…
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### Ask away!
When i run v1.3.1 without providing a reference, I see a "multiple sequence alignment" (MSA) even if there is only one plasmid in the "group".
When i run v1.3.1 and provide a full re…
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Dear Sir,
I used 64 CPUs and provided 2TB of memory to run BiG-SCAPE-1.1.5, for clustering 140,000 BGCs. However, I encountered the following error: OSError: [Errno 12] Cannot allocate memory. The c…
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Hi Sigalign team,
Thanks for the amazing library for sequence alignment. I have a question related to aligning high similar sequences against a reference. If the read is always > some certain thre…
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Hi! I'm writing with a question about input matrix size limits. I have a large alignment file-- 158 individuals, 49M sites, and I'm getting a segmentation fault error. Do you have any recommendations …
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## The problem
First, let's define the sequence collection classes. These are classes that allow manipulations of multiple sequences, either as unaligned or aligned groups.
The current implement…