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epi2me-labs
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wf-clone-validation
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Adding flye's --min-overlap command line option as a param to wf-clone-valiudation
#52
potapovneb
opened
6 days ago
3
Inconsistant raw read count along the report
#51
drabitoris
opened
1 week ago
1
Change "output" to "publish" to avoid new keyword in NextFlow 24
#50
ryandward
opened
2 weeks ago
2
Plannotate error executing process
#49
ChristopherRichie
opened
3 weeks ago
1
Contig vs. consensus, and inconsistencies in assembly size
#48
desireetillo
opened
1 month ago
4
workflow fails with Nextflow 24.04.1
#47
angelovangel
opened
1 month ago
3
checkIfEnoughReads too stringent
#46
angelovangel
closed
1 month ago
2
No .insert.fasta output when providing --primers and --insert_reference
#45
drabitoris
closed
3 weeks ago
2
workflow in HPC cluster
#44
mbacino
closed
3 weeks ago
2
How to update workflow for Dorado basecalling output
#43
rwiltonanl
closed
1 month ago
3
failed to run nextflow command
#42
ryao-mdanderson
opened
3 months ago
2
failed to run commands
#41
ryao-mdanderson
closed
3 months ago
2
Option for generating multiple reports with subset of samples.
#40
gabyrech
closed
1 month ago
6
Error with data on NFS storage
#39
angelovangel
closed
4 months ago
2
Workflow working, but no final fastq file or gbk file generated (medaka polishing failed)
#38
MattCarlile05
closed
4 months ago
8
hangs because it tries to stage NO_REG_BED which doesn't exist
#37
esrice
closed
5 months ago
3
Failed to resolve homopolymeric plasmid DNA sequences or poly A tail in plasmids
#36
chatla01
closed
6 months ago
2
Considering adding an alterative assembly strategy using Canu assembler
#35
gabyrech
closed
3 months ago
13
What is the rationale of using '--meta' parameter on Flye?
#34
gabyrech
closed
6 months ago
4
Error generating report (workflow-glue report)
#33
gabyrech
closed
8 months ago
7
v0.5.2 Downsampled plots became slim
#32
drabitoris
closed
8 months ago
5
Error executing Plannotate
#31
gabyrech
closed
9 months ago
3
New GenBank file output appears broken
#30
ChristopherRichie
closed
8 months ago
3
`--threads` parameter not working
#29
angelovangel
closed
10 months ago
1
Pipeline:report keeps crashing
#28
sgraindorge
closed
10 months ago
2
Assembly Result Shows Shorter Length than Original Plasmid Despite High-Quality Read Distribution
#27
FankangMeng
closed
8 months ago
11
[Bug]: Directory Issue?
#26
CESTechSupport
closed
10 months ago
14
[Bug]: basecaller_cfg error
#25
CESTechSupport
closed
9 months ago
5
[Bug]: BED format problem
#24
ChristopherRichie
closed
10 months ago
6
[Bug]: README does not include expected outcome from test_data
#23
ChristopherRichie
closed
10 months ago
2
[Enhancement] combine sample and size sheets
#22
JWDebler
closed
10 months ago
3
[Feature Request]: add back the Genbank output present in pLannotate
#21
splaisan
closed
10 months ago
7
[Bug]: --basecaller_cfg error
#20
JWDebler
closed
10 months ago
4
can I add my own annotation file (genebank format) into the wf-clone-validation-db
#19
lzhangUT
closed
10 months ago
2
[Bug]: test run fails (again)
#18
ChristopherRichie
closed
1 year ago
5
fixed columns and tabs in medaka_models.tsv
#17
QGouil
closed
1 year ago
1
fixed column issues in medaka models
#16
QGouil
closed
1 year ago
0
[Bug]: Test run fails
#15
CFGrote
closed
1 year ago
2
[Bug]: Add queue executor memory requirement for tasks
#14
multimeric
closed
10 months ago
3
[Bug]: workflow skips steps when approx_size_sheet.txt is specified
#13
desireetillo
closed
11 months ago
6
[Bug]: Process `pipeline:getVersions` terminated with an error exit status (141)
#12
QGouil
closed
11 months ago
2
Inconsistent output assemblies with the same input reads
#11
zihengluo
closed
11 months ago
7
Fail to run and then fail to produce plasmids and test data[Bug]:
#10
BenjaminSchwessinger
closed
1 year ago
2
[Bug]: Failed to polish assembly with Medaka
#9
ONT-Tseng
closed
1 year ago
4
Incompatibility with certain non-alphanumeric characters will break workflow
#8
markb729
closed
1 year ago
2
[Bug]: NOTE: Process `pipeline:assembleCore (1)` terminated with an error exit status (1) -- Execution is retried (1)
#7
nathanrussart
closed
12 months ago
2
Fix for "Error: None of the directories given contain .fastq(.gz) files."
#6
drpatelh
closed
10 months ago
6
Error executing process > 'pipeline:runPlannotate' Caused by: Missing output file(s) `*annotations.bed` expected by process `pipeline:runPlannotate`
#5
senidr
closed
1 year ago
10
Failing at Medaka consensus stage both with condo and singularity
#4
callumparr
closed
1 year ago
6
Failed to combine FastQ error
#3
Vijibt
closed
2 years ago
7
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