Closed nibortolum closed 7 years ago
Hi, Mattieu,
Would you tell us the procedure you used in cloning RDPTools? Thank you.
Benli Chai RDP Staff
On Wed, Jun 7, 2017 at 8:48 AM, nibortolum notifications@github.com wrote:
Hello,
i run on ubuntu 16.04 LTS and openjdk 9-internal.
RDPtool compilation fails with this error:
-do-compile: [javac] Compiling 73 source files to /home/mulot/repo/RDPTools/ ReadSeq/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] error: Source option 1.5 is no longer supported. Use 1.6 or later. [javac] error: Target option 1.5 is no longer supported. Use 1.6 or later.
BUILD FAILED /home/mulot/repo/RDPTools/Clustering/nbproject/build-impl.xml:896: The following error occurred while executing this line: /home/mulot/repo/RDPTools/Clustering/nbproject/build-impl.xml:1470: The following error occurred while executing this line: /home/mulot/repo/RDPTools/AlignmentTools/nbproject/build-impl.xml:896: The following error occurred while executing this line: /home/mulot/repo/RDPTools/AlignmentTools/nbproject/build-impl.xml:1414: The following error occurred while executing this line: /home/mulot/repo/RDPTools/ReadSeq/nbproject/build-impl.xml:920: The following error occurred while executing this line: /home/mulot/repo/RDPTools/ReadSeq/nbproject/build-impl.xml:300: Compile failed; see the compiler error output for details.
I got stuck on this for hal a day and couldn't find any workaround. Maybe you have an idea ?
Cheers,
Matthieu
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/rdpstaff/RDPTools/issues/18, or mute the thread https://github.com/notifications/unsubscribe-auth/AKlEVtC7jWTZcobTiNIIxzcmzkXuiWuPks5sBpw2gaJpZM4Nyp5E .
-- RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842
So, I striclty followed the README : git clone https://github.com/rdpstaff/RDPTools.git git submodule init git submodule update
and then make.
Thank you,
Matthieu
can you try using jdk8 Also what version of ant do you have
it actually did work, thanks a lot !
https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail Garanti sans virus. www.avast.com https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
2017-06-07 15:43 GMT+02:00 Santosh Kumar G notifications@github.com:
can i try using jdk8
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/rdpstaff/RDPTools/issues/18#issuecomment-306798646, or mute the thread https://github.com/notifications/unsubscribe-auth/AGnHlkVFxNA5X1wWJcavzYxZLhC-jRvXks5sBqjwgaJpZM4Nyp5E .
I have the same problem when I try to make:
-do-compile:
[javac] Compiling 73 source files to /home/dunoyerd/bin/RDPTools/ReadSeq/build/classes
[javac] warning: [options] bootstrap class path not set in conjunction with -source 5
[javac] error: Source option 5 is no longer supported. Use 6 or later.
[javac] error: Target option 1.5 is no longer supported. Use 1.6 or later.
BUILD FAILED
/home/dunoyerd/bin/RDPTools/Clustering/nbproject/build-impl.xml:896: The following error occurred while executing this line:
/home/dunoyerd/bin/RDPTools/Clustering/nbproject/build-impl.xml:1470: The following error occurred while executing this line:
/home/dunoyerd/bin/RDPTools/AlignmentTools/nbproject/build-impl.xml:896: The following error occurred while executing this line:
/home/dunoyerd/bin/RDPTools/AlignmentTools/nbproject/build-impl.xml:1414: The following error occurred while executing this line:
/home/dunoyerd/bin/RDPTools/ReadSeq/nbproject/build-impl.xml:920: The following error occurred while executing this line:
/home/dunoyerd/bin/RDPTools/ReadSeq/nbproject/build-impl.xml:300: Compile failed; see the compiler error output for details.
Here are my java and javac:
~/bin/RDPTools$ update-alternatives --config java
Il existe 3 choix pour l'alternative java (qui fournit /usr/bin/java).
Sélection Chemin Priorité État
------------------------------------------------------------
0 /usr/lib/jvm/java-10-oracle/bin/java 1091 mode automatique
1 /usr/lib/jvm/java-10-oracle/bin/java 1091 mode manuel
2 /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java 1081 mode manuel
* 3 /usr/lib/jvm/java-8-oracle/jre/bin/java 1081 mode manuel
~/bin/RDPTools$ update-alternatives --config javac
Il existe 2 choix pour l'alternative javac (qui fournit /usr/bin/javac).
Sélection Chemin Priorité État
------------------------------------------------------------
0 /usr/lib/jvm/java-10-oracle/bin/javac 1091 mode automatique
1 /usr/lib/jvm/java-10-oracle/bin/javac 1091 mode manuel
* 2 /usr/lib/jvm/java-8-oracle/bin/javac 1081 mode manuel
Anf here the command lines before the make:
git clone https://github.com/rdpstaff/RDPTools.git
cd RDPTools
git checkout 2.0.2
git submodule init
git submodule update
make
I am following the FROGS install commands... (https://github.com/geraldinepascal/FROGS/blob/master/INSTALL_from_source.md)
Can anybody help me?
Hello,
i run on ubuntu 16.04 LTS and openjdk 9-internal.
RDPtool compilation fails with this error:
-do-compile: [javac] Compiling 73 source files to /home/mulot/repo/RDPTools/ReadSeq/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] error: Source option 1.5 is no longer supported. Use 1.6 or later. [javac] error: Target option 1.5 is no longer supported. Use 1.6 or later.
BUILD FAILED /home/mulot/repo/RDPTools/Clustering/nbproject/build-impl.xml:896: The following error occurred while executing this line: /home/mulot/repo/RDPTools/Clustering/nbproject/build-impl.xml:1470: The following error occurred while executing this line: /home/mulot/repo/RDPTools/AlignmentTools/nbproject/build-impl.xml:896: The following error occurred while executing this line: /home/mulot/repo/RDPTools/AlignmentTools/nbproject/build-impl.xml:1414: The following error occurred while executing this line: /home/mulot/repo/RDPTools/ReadSeq/nbproject/build-impl.xml:920: The following error occurred while executing this line: /home/mulot/repo/RDPTools/ReadSeq/nbproject/build-impl.xml:300: Compile failed; see the compiler error output for details.
I got stuck on this for hal a day and couldn't find any workaround. Maybe you have an idea ?
Cheers,
Matthieu