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rdpstaff / RDPTools

Collection of commonly used RDP Tools for easy building
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RDP traindata not found #5

Open gisleDK opened 8 years ago

gisleDK commented 8 years ago

Hi guys

make will fail because of missing data at rdp:

Download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: /home/gisle/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED /home/gisle/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

Total time: 7 seconds make: *\ [classifier/dist/classifier.jar] Error 1

Hope to hear from you soon,

Gisle Vestergaard Helmholtz Zentrum München

rdpstaffmsu commented 8 years ago

Hi, Gisele,

Sorry for the problem. We are working to get it fixed.

Benli Chai RDP Staff

On Wed, Aug 12, 2015 at 5:02 AM, Gisle Vestergaard <notifications@github.com

wrote:

Hi guys

make will fail because of missing data at rdp:

Download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: /home/gisle/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED /home/gisle/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

Total time: 7 seconds make: *\ [classifier/dist/classifier.jar] Error 1

Hope to hear from you soon,

Gisle Vestergaard Helmholtz Zentrum München

— Reply to this email directly or view it on GitHub https://github.com/rdpstaff/RDPTools/issues/5.

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

rdpstaffmsu commented 8 years ago

Hi, Gisele,

It's fixed. Let me how it works for you. Sorry for the inconvenience.

Benli

On Wed, Aug 12, 2015 at 10:02 AM, RDP Staff rdpstaff@msu.edu wrote:

Hi, Gisele,

Sorry for the problem. We are working to get it fixed.

Benli Chai RDP Staff

On Wed, Aug 12, 2015 at 5:02 AM, Gisle Vestergaard < notifications@github.com> wrote:

Hi guys

make will fail because of missing data at rdp:

Download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: /home/gisle/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED /home/gisle/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

Total time: 7 seconds make: *\ [classifier/dist/classifier.jar] Error 1

Hope to hear from you soon,

Gisle Vestergaard Helmholtz Zentrum München

— Reply to this email directly or view it on GitHub https://github.com/rdpstaff/RDPTools/issues/5.

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

gisleDK commented 8 years ago

BUILD SUCCESSFUL

Thanks for the fast response.

Gisle

walterxie commented 8 years ago

It happens again:

download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED ~/WorkSpace/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

Total time: 14 seconds make: *\ [classifier/dist/classifier.jar] Error 1

rdpstaffmsu commented 8 years ago

Hi, Gisele,

All the link work as I tested. Would you let me know the time of the day the build process failed? Thank you.

Benli

On Tue, Sep 22, 2015 at 1:21 AM, Walter notifications@github.com wrote:

It happens again:

download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED ~/WorkSpace/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

Total time: 14 seconds make: *\ [classifier/dist/classifier.jar] Error 1

— Reply to this email directly or view it on GitHub https://github.com/rdpstaff/RDPTools/issues/5#issuecomment-142184381.

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

gisleDK commented 8 years ago

Hi Benli

My build was successful 13th of August (and I closed this thread...I thought). I do not know if walterxies problem is related.

Cheers,

Gisle

walterxie commented 8 years ago

Hi, Benli and Gisele,

Thank you both to follow up. The "build" is working now. And the link http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz is also working now, but which gave me "connection failure error" yesterday.

Cheers, Walter

IdoBar commented 7 years ago

Hi Benli,

The link is "dead" again and the build fails (24/02/207, 1:20pm AET).

Thanks, Ido

gunturus commented 7 years ago

@IdoBar it should be working now

swtama21 commented 7 years ago

Hi everyone, the command 'make' fails because of missing data at rdp now(27/07/2017) I guess the link is unavailable (http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz) How can I fix this??

gunturus commented 7 years ago

@swtama21 we had a ddos attack today. It should work now.

ycl6 commented 6 years ago

Hi, I tried to manually download data.tgz but transfer is stuck

$ wget -c -O data.tgz http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz
--2017-09-15 16:37:54--  http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz
Resolving rdp.cme.msu.edu (rdp.cme.msu.edu)... 35.8.164.79
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... connected.
HTTP request sent, awaiting response... 206 Partial Content
Length: 181332714 (173M), 181318922 (173M) remaining [application/x-gzip]
Saving to: ‘data.tgz’

data.tgz                                          0%[                                                                                                        ]  41.08K  --.-KB/s   eta 19d 12h
chaibenl commented 6 years ago

Would you like to try downloading with a web browser?

Sent from my iPhone

On Sep 15, 2017, at 4:43 AM, I-Hsuan Lin notifications@github.com wrote:

Hi, I tried to manually download data.tgz but transfer is stuck

$ wget -c -O data.tgz http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz --2017-09-15 16:37:54-- http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz Resolving rdp.cme.msu.edu (rdp.cme.msu.edu)... 35.8.164.79 Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... connected. HTTP request sent, awaiting response... 206 Partial Content Length: 181332714 (173M), 181318922 (173M) remaining [application/x-gzip] Saving to: ‘data.tgz’

data.tgz 0%[ ] 41.08K --.-KB/s eta 19d 12h — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.

ycl6 commented 6 years ago

@chaibenl I leave wget -c for a couple of hours then at the 7th retry the download suddenly is completed.

sbombin commented 6 years ago

Hello. I have the similar problem when I did it with "make" command:

BUILD FAILED /Users/phycolab/Desktop/RDPTools/classifier/build.xml:51: Error while expanding /Users/phycolab/Desktop/RDPTools/classifier/build/classes/data.tgz java.io.EOFException: Unexpected end of ZLIB input stream at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240) at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158) at java.util.zip.GZIPInputStream.read(GZIPInputStream.java:117) at org.apache.tools.tar.TarBuffer.readBlock(TarBuffer.java:253) at org.apache.tools.tar.TarBuffer.readRecord(TarBuffer.java:220) at org.apache.tools.tar.TarInputStream.read(TarInputStream.java:603) at java.io.FilterInputStream.read(FilterInputStream.java:107) at org.apache.tools.ant.taskdefs.Expand.extractFile(Expand.java:357) at org.apache.tools.ant.taskdefs.Untar.expandStream(Untar.java:154) at org.apache.tools.ant.taskdefs.Untar.expandFile(Untar.java:108) at org.apache.tools.ant.taskdefs.Expand.execute(Expand.java:157) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.Target.execute(Target.java:448) at org.apache.tools.ant.Target.performTasks(Target.java:469) at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399) at org.apache.tools.ant.Project.executeTarget(Project.java:1370) at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41) at org.apache.tools.ant.Project.executeTargets(Project.java:1260) at org.apache.tools.ant.Main.runBuild(Main.java:849) at org.apache.tools.ant.Main.startAnt(Main.java:228) at org.apache.tools.ant.launch.Launcher.run(Launcher.java:283) at org.apache.tools.ant.launch.Launcher.main(Launcher.java:101)

Total time: 4 minutes 49 seconds make: *** [classifier/dist/classifier.jar] Error 1

abenaa07 commented 6 years ago

Hello,

I'm getting the same error message:

BUILD FAILED /RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /RDPTools/classifier/build/classes/data.tgz

Total time: 2 seconds Makefile:24: recipe for target 'classifier/dist/classifier.jar' failed make: *** [classifier/dist/classifier.jar] Error 1

komorihi commented 6 years ago

I'm on the same error. And when accessing http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz from web browser, I got an error "RDP :: Page Not Found".

dacb commented 6 years ago

@rdpstaffmsu I am also having this problem.

gunturus commented 6 years ago

Thank you for noticing the problem. We have two servers running RDP. One of the servers didn't have the file. We now have the servers mirrored and you will be download the file.

thank you for noticing the problem

ppericard commented 5 years ago

Hi,

I've been having the same pb for a few hours. Do you have an idea when the server will be up again?

Maybe having the training data also stored in a completely different server, by another organization, could help when your server is down. But you would also need a way to set the compiler to get the data on this other server.

Thanks in advance.

Cheers, Pierre

gunturus commented 5 years ago

HI Pierre,

I have restarted the website. We have been getting unpredictable tomcat server crashes. Can you try it now.

Santosh

ppericard commented 5 years ago

Yep. It works now! Thank you ^^

stav3eyal commented 2 years ago

Hi, I'm having the same problem.

kumarpatel commented 6 months ago

same problem. Running make command on 7:18 p.m. Friday, January 12, 2024

Can the data.tgz made available?

cebercoto commented 2 months ago

Same problem here as of 14/05/2024