This application will derive characteristic and discriminatory explanations for groups of entities described by ontology classes. For example, groups of patients described by HPO classes. For more information, please read the paper (now accepted!).
Here is the most recent stable release. To install, you just have to extract either the ZIP or Tar file, then either run the klarigi
binary from the extracted folder directly, or add it to your PATH (see the later linked tutorial for an example). You can also check out the snapshot release, which includes lots of performance improvements and some bug fixes.
This tutorial will walk you through how to use Klarigi. You can also run klarigi -h
to see a full list of options and parameters.