Open gracegyho opened 9 months ago
Maybe this additional message after installing v 1.11.1 might shed light on the issue I'm facing:
Channels:
- bioconda
- conda-forge
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /home/gho/miniconda3/envs/kmer-db-v1-11-1
added / updated specs:
- kmer-db=1.11.1
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
kmer-db bioconda/linux-64::kmer-db-1.11.1-hdcf5f25_2
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
zlib conda-forge/linux-64::zlib-1.2.13-hd590300_5
Proceed ([y]/n)? y
Downloading and Extracting Packages
Preparing transaction: done
Verifying transaction: -
SafetyError: The package for kmer-db located at /home/gho/miniconda3/pkgs/kmer-db-1.11.1-hdcf5f25_2
appears to be corrupted. The path 'bin/kmer-db'
has an incorrect size.
reported size: 484392 bytes
actual size: 501880 bytes
done
Executing transaction: done
Hi there,
I am actually running kmer-db as a part of SqueezeMeta's dependencies, but even when I do a fresh install via conda in a new environment (versions 1.11.1, 1.7.6, or 1.9.2), and run kmer-db command, I get the error message "Illegal instruction".
I am running on an institute server running Debian 4.19.289-2... Not sure what else is relevant here.
I even tried installing the binary from the tarball, running make, and the executable kmer-db is also throwing the same error.