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reillytilbury
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coppafish
Python version of iss software
MIT License
4
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2
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Version 0.10.0 -> alpha branch
#221
paulshuker
closed
5 months ago
0
Optical flow image registration
#220
paulshuker
closed
5 months ago
0
Email users at the end of a pipeline
#219
paulshuker
closed
4 months ago
0
RegistrationViewer with optical flow
#218
paulshuker
closed
5 months ago
2
Filter + OMP Refactor Merge
#217
paulshuker
closed
5 months ago
0
Making testing great again
#216
paulshuker
closed
6 months ago
0
icp updates
#215
reillytilbury
closed
6 months ago
0
Nonlinear registration
#214
reillytilbury
closed
6 months ago
0
new filter fixes
#213
reillytilbury
closed
6 months ago
1
Remove all old jax code
#212
paulshuker
closed
5 months ago
0
Write all code in pytorch
#211
paulshuker
opened
6 months ago
0
minor changes: fixed bug in registration pdf creator and increased st…
#210
reillytilbury
closed
6 months ago
0
Users can move output directory
#209
paulshuker
closed
5 months ago
0
pull new alpha changes into nonlinear reg
#208
reillytilbury
closed
6 months ago
0
alpha -> dev
#207
reillytilbury
closed
6 months ago
0
Alpha stage -> Alpha
#206
reillytilbury
closed
6 months ago
0
ICP z distance threshold
#205
paulshuker
closed
5 months ago
0
auto check for online updates
#204
paulshuker
closed
5 months ago
0
update dev
#203
reillytilbury
closed
6 months ago
0
Alpha 0.9.3 -> alpha branch
#202
paulshuker
closed
6 months ago
0
95 pdf diagnostics for register
#201
paulshuker
closed
6 months ago
0
Wiener -> Richardson-Lucy filtering
#200
paulshuker
opened
6 months ago
0
High ram in detect spots fix
#199
paulshuker
closed
6 months ago
0
PDF diagnostics for stitch
#198
paulshuker
closed
2 weeks ago
0
pull pytorch updates
#197
reillytilbury
closed
6 months ago
0
Remove difference of Hannings
#196
paulshuker
closed
5 months ago
0
broken Viewer plots
#195
CAmaat
closed
2 weeks ago
0
Zarr support in the Notebook
#194
paulshuker
closed
2 months ago
0
OMP cupy support
#193
paulshuker
closed
4 months ago
1
docs update + pytorch GPU fix attempt
#192
paulshuker
closed
6 months ago
0
Alpha 0.9.2 -> alpha branch
#191
paulshuker
closed
7 months ago
0
Alpha 0.9.2 Update
#190
paulshuker
closed
7 months ago
0
Slow speed in OMP "Finding spots for all X genes"
#189
paulshuker
closed
7 months ago
4
Documentation on tile indexing
#188
paulshuker
opened
7 months ago
1
Remove the "analysis" directory
#187
paulshuker
closed
7 months ago
0
Better message logging
#186
paulshuker
closed
7 months ago
2
Alpha 0.9.1 Update
#185
paulshuker
closed
7 months ago
0
Alpha Update 0.9.1
#184
paulshuker
closed
7 months ago
0
Out of GPU vRAM on large dataset in OMP
#183
paulshuker
closed
5 months ago
0
Vectorise `find_local_maxima` in find_spots
#182
paulshuker
closed
7 months ago
0
Alpha 0.9.0 -> alpha branch
#181
paulshuker
closed
7 months ago
0
Alpha 0.9.0
#180
paulshuker
closed
7 months ago
0
Try U-FISH in filter
#179
paulshuker
opened
7 months ago
0
Dev -> alpha 0.8.3
#178
paulshuker
closed
7 months ago
0
OMP using GPU pytorch
#177
paulshuker
closed
7 months ago
0
Change our "invalid pixel" value to be `np.iinfo(np.uint16).max`
#176
paulshuker
closed
1 month ago
1
Filter only with Wiener
#175
paulshuker
closed
5 months ago
1
Stitch Problems
#174
reillytilbury
closed
2 months ago
3
deconvolution viewer
#173
reillytilbury
opened
7 months ago
1
Difference Of Hannings Speed Up
#172
reillytilbury
closed
5 months ago
2
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