related-sciences nxontology-ml issues

related-sciences / nxontology-ml

Machine learning to classify ontology nodes

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Move default cache location to /tmp/nxontology-ml/cache

#51 yonromai closed 9 months ago
0
How to handle non diseases in EFO?

#50 dhimmel opened 9 months ago
1
Change cache logging from debug to info

#49 yonromai closed 9 months ago
0
Fix default take value of train and predict methods

#48 yonromai closed 9 months ago
1
Use multithreading to fetch text embeddings

#47 yonromai closed 9 months ago
0
Allow to configure cache location

#46 yonromai closed 9 months ago
2
Create cache parent dir

#45 yonromai closed 9 months ago
0
Freeze graph & log embedding cache path

#44 yonromai closed 9 months ago
2
pyproject: unpin some minor versions

#43 dhimmel closed 9 months ago
0
Add progress bar when feature computation takes >5s

#42 yonromai closed 9 months ago
0
include training classification dataset in distributions

#41 dhimmel closed 9 months ago
1
Add model training & prediction endpoints to the library

#40 yonromai closed 9 months ago
1
Enhance and test feature/model determinism

#39 yonromai closed 10 months ago
1
Remove KNN text embeddings feature logic

#38 yonromai closed 10 months ago
0
Run `poetry update`

#37 yonromai closed 10 months ago
0
Ease NXOntology serialization

#36 yonromai closed 10 months ago
4
Integrating nxontology-ml predictions with the nxontology-data efo output

#35 dhimmel closed 9 months ago
29
Add TA features to CatBoost model

#34 yonromai closed 10 months ago
1
Add EFO TA features to the term precision classification model

#33 eric-czech closed 10 months ago
1
Improve feature importance plots

#32 yonromai closed 10 months ago
0
Run model on new ontology version and export labels and features

#31 yonromai closed 10 months ago
4
Inference on a current version of EFO

#30 yonromai closed 9 months ago
7
Add feature importance notebook

#29 yonromai closed 10 months ago
11
Experiment: Add GPT-4 labels as features in CatBoost model

#28 yonromai closed 10 months ago
5
Add subsets features

#27 yonromai closed 10 months ago
2
Add some more few shot examples

#26 yonromai closed 10 months ago
5
Log requests and responses to/from OpenAI's API

#25 yonromai closed 10 months ago
6
Add more GPT-4 experiments

#24 yonromai closed 10 months ago
3
Add allowed_labels to config and reject non-allowed labels

#23 yonromai closed 10 months ago
0
Add model n config param to cache namespace

#22 yonromai closed 10 months ago
0
Add GPT-4 experiment on 500 samples

#21 yonromai closed 10 months ago
7
Handle cases where input node is duplicated in output completion

#20 yonromai closed 10 months ago
0
Add training data consistent shuffling

#19 yonromai closed 10 months ago
0
Run experiments on 3 classes (instead of 4)

#18 yonromai closed 10 months ago
0
Fix GptTagger issues

#17 yonromai closed 10 months ago
0
Fix flaky test

#16 yonromai closed 10 months ago
0
Add mutli-completion support to GPT Tagger

#15 yonromai closed 10 months ago
0
Include EFO subsets as features for model

#14 dhimmel closed 10 months ago
0
Prepare the MONDO outreach presentation materials

#13 dhimmel closed 10 months ago
12
Add text embedding features + experiments

#12 yonromai closed 10 months ago
3
Add small df test util

#11 yonromai closed 11 months ago
1
Refactor existing code to use Sklearn's pipeline feature

#10 yonromai closed 11 months ago
3
Good metrics for model evaluation?

#9 yonromai closed 11 months ago
6
Compare few-shot GPT4 features to embedding features for EFO term precision classification

#8 eric-czech closed 10 months ago
17
Add simple Catboost model

#7 yonromai closed 12 months ago
1
Add GptTagger code

#6 yonromai closed 1 year ago
2
Legacy RS Classification for terms in EFO OTAR Slim v3.43.0

#5 dhimmel closed 1 year ago
1
Add tests and enforce test coverage

#4 yonromai closed 1 year ago
0
Experiment with LLM-derived EFO term classifications

#3 eric-czech closed 1 year ago
0
Build an EFO term "precision" classification pipeline

#2 eric-czech opened 1 year ago
7