Notebook is used to do the actual data processing Module contains all necessary functions
getter (ie all functions strating with 'get') is used to get data. The getter will either generate the data or retrieve it from the cache if it exists
the cache
REMI: QUESTIONS FOR JASMINE JAS: i think this convention is ok - discuss
add csv with columns : mouse_id , group_id , COMPOUND_REGION... or BEHAVIOR_TIME (e.g. HT_20) to input folder
fill info in cell 1 of notebook (compound_ratio_mapping, ect)
perform outlier selection for experiment (including ratios chiosen in first cell)
generate quantitative histograms and aggregated stats table functions : REMI?
generate correlograms (use case for all three in functions) : REMI?
clasical_corellogram : getAndPlotSingleCorrelogram(filename, experiment='agonist_antagonist', correlogram_type='compound',
to_correlate='GLU', p_value_threshold=0.05, n_minimum=5, from_scratch= True)
square_correlogram : getAndPlotSingleCorrelogram(filename, experiment='agonist_antagonist', correlogram_type='compound',
to_correlate='GLU-GABA', p_value_threshold=0.05, n_minimum=5, from_scratch= True)
bar_corellogram
#see whatsapp image 3/5/23
within BR / within compound