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What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
https://mult1fractal.github.io/wtp-documentation/
GNU General Public License v3.0
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Potential new tool: viraLM
#196
hoelzer
opened
3 months ago
0
Pharokker integration
#195
mult1fractal
closed
3 months ago
2
extract contigs of interest-- add new process
#194
mult1fractal
closed
3 months ago
1
rm container option that crashes singularity
#193
hoelzer
closed
4 months ago
6
virsorter2 error
#192
Microbion
closed
9 months ago
3
Update all tools
#191
mult1fractal
opened
1 year ago
0
Testrun failed
#190
xykb86
closed
9 months ago
1
deepvirfinder uses more cores unexpectly
#189
Microbion
opened
1 year ago
3
Dockerhub link not available?
#188
joelwwh
closed
1 year ago
2
Download of sourmash and vibrant databases always fail
#187
pentamorfico
opened
1 year ago
4
running WtP without containers, using native installation of required tools
#186
boegel
closed
9 months ago
3
update gh-pages-monday with new report
#185
mult1fractal
closed
1 year ago
0
P-value and score
#184
FabiKeiki
opened
1 year ago
1
command not found at download_references step
#183
Sanrrone
closed
1 year ago
3
A fasta file with all phage-positive contigs?
#182
deminatanja
closed
1 year ago
16
computational cost
#181
444thLiao
closed
9 months ago
1
Tools deactivation
#180
deminatanja
closed
1 year ago
1
Vibrant now working
#179
priscillaisaac98
opened
1 year ago
1
Error with report_heatmap_table.input
#178
deminatanja
opened
1 year ago
2
Pharokka for phage annotation
#177
hoelzer
closed
3 months ago
3
Deepvirfinder error
#176
deminatanja
closed
9 months ago
1
Installation error
#175
ShailNair
closed
1 year ago
3
"rm" missing in the metaphinder script?
#174
deminatanja
closed
1 year ago
1
Some tasks failed when using v1.2.0 of Wtp
#173
quliping
closed
1 year ago
4
Revision gigascience
#172
mult1fractal
closed
2 years ago
0
Errors running WtP
#171
dinahoch
closed
2 years ago
11
.
#170
dinahoch
closed
2 years ago
0
Workflow execution completed unsuccessfully
#169
quliping
closed
2 years ago
5
Could not run wtp with 'nohup'
#168
quliping
closed
2 years ago
3
Could download database by myself?
#167
xanadu314
closed
2 years ago
2
virsorter2 terminated with an error
#166
ntromas
opened
2 years ago
5
Install singularity without admins permissions
#165
lingyi-owl
closed
2 years ago
4
Issues downloading database inspite of --no-check-certificate
#164
mdhishamshaikh
closed
1 year ago
10
Tasks are ABORTED&FAILED ，Running time too long
#163
bio-shun
closed
2 years ago
3
Uncommited changes?
#162
mdhishamshaikh
closed
2 years ago
4
nextflow log files not updating while wtp running
#161
l-r-den
opened
2 years ago
9
the conda installation problem of the newest version v1.1.0
#160
dangchenyuan
closed
2 years ago
19
weird, not reproducible error .. somtimes it occures sometimes it doesnt
#159
mult1fractal
closed
2 years ago
0
R markdown report
#158
mult1fractal
closed
2 years ago
2
Vibrant and virsorter 2 generate duplicate rows for similar contig
#157
mult1fractal
closed
2 years ago
3
could not run wtp
#156
quliping
closed
2 years ago
5
PhaMer for identifying bacteriophages from metagenomic data
#155
hoelzer
opened
2 years ago
0
Integrating WtP pipeline to a snakemake pipeline and adding workflow controls
#154
lingyi-owl
closed
2 years ago
2
VirFinder output reached 'max'
#153
lingyi-owl
closed
2 years ago
2
virsorter2-db not working in v1.0.2
#152
phageattack
closed
2 years ago
5
exit status (137)
#151
ntromas
closed
2 years ago
7
run WtP changed the dot in the scaffold headers to underscore
#150
lingyi-owl
closed
2 years ago
2
version 1.0.2 conda
#149
SebasSaenz
closed
2 years ago
1
remove databases after run to reduce footprint
#148
mult1fractal
closed
1 year ago
0
cache directory of singularity
#147
444thLiao
opened
3 years ago
0
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