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reslp
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phylociraptor
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
https://phylociraptor.readthedocs.io
MIT License
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A small suggestion
#35
deyuanyang
opened
2 weeks ago
1
Setup results missing
#34
vrohnie
closed
4 months ago
3
documentation in report-file
#33
froehlichd
opened
6 months ago
0
integration of compleasm as alternative to BUSCO
#32
estolle
opened
9 months ago
1
Add functionality for relative composition variability
#31
reslp
closed
1 year ago
0
Attempt to fix hashing when empty strings or None is specified
#30
reslp
closed
1 year ago
0
Introduce analyses hashes
#29
reslp
closed
1 year ago
0
command line arguments of altered config parameters are not passed on correctly to snakemake
#28
reslp
opened
1 year ago
0
Plotting tree fails when there are NA support values
#27
reslp
closed
1 year ago
0
Report fails when there are multiple BUSCO set directories
#26
reslp
closed
11 months ago
1
Improved logging functionality
#25
reslp
closed
2 years ago
0
Add BMGE Trimmer plus more
#24
reslp
closed
2 years ago
0
Introducing the util module
#23
reslp
closed
2 years ago
0
njtree: Concatenate requires modeltest
#22
reslp
closed
1 year ago
1
some cosmetics and behavioral refinements
#21
chrishah
closed
2 years ago
0
change behavior of aggregate_best_models to take checkpoints as input
#20
chrishah
closed
2 years ago
1
speed up filtering alignments based on nparsimony and nseqs
#19
chrishah
closed
2 years ago
0
Aggregate best models does also incorporate older modeltest results which causes tree reconstructions to fail
#18
reslp
closed
2 years ago
0
Locally provided gzipped files mess up the orthology step
#17
reslp
closed
11 months ago
0
report: Genome download overview table header is wrongly formated
#16
reslp
closed
1 year ago
1
check does not report speciestree correctly when finished
#15
reslp
closed
2 years ago
0
multi - A giant leap towards version 1.0
#14
reslp
closed
2 years ago
0
create_sequence_files parallel
#13
chrishah
closed
3 years ago
0
add exclude functionality to orthology part
#12
chrishah
closed
3 years ago
0
change column in partition file creation
#11
chrishah
closed
3 years ago
0
minor things
#10
chrishah
closed
3 years ago
0
New functionality check
#9
reslp
closed
3 years ago
0
Add immediate_submit submodule
#8
reslp
closed
3 years ago
0
Add more extensive documentation
#7
reslp
closed
3 years ago
0
Larger overhaul with many improvements
#6
reslp
closed
3 years ago
0
Add new runmode -m njtree to create a Neighbor-Joining Tree.
#5
reslp
closed
3 years ago
0
Add improved filtering of busco results and alignments
#4
reslp
closed
3 years ago
0
Add support for Torque Clusters
#3
reslp
closed
3 years ago
0
Better genome download
#2
reslp
closed
3 years ago
0
Sge
#1
reslp
closed
3 years ago
0