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rgcgithub
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clamms
CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
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segmentation fault
#29
lmanchon
opened
1 year ago
0
calc_window_mappability.py
#28
lmanchon
opened
1 year ago
0
SVD from matrix
#27
YeCheng57
opened
3 years ago
0
Update calc_window_mappability.py
#26
KathyCat1
closed
3 years ago
0
SVD Software no longer available
#25
ricardoharripaul
opened
3 years ago
5
ERROR: coverage file and models file must be for exactly the same set of genomic windows
#24
tpjones15
opened
3 years ago
1
Nearest neighbours
#23
katherinef
opened
4 years ago
0
Error executing CLAMMS: ERROR: more than 4096 CNVs detected!
#22
lakhujanivijay
opened
4 years ago
2
Mappability file for hg38
#21
katherinef
opened
4 years ago
2
Gender information is optional - will omitting that make any difference?
#20
lakhujanivijay
opened
4 years ago
0
Which file is the sample.cnv.txt file used by plot_cnv.sh script?
#19
lakhujanivijay
opened
5 years ago
0
What file from the GATK DepthOfCoverage should be input to gatk_coverage_to_bed?
#18
lakhujanivijay
opened
5 years ago
1
command gatk_coverage_to_bed is missing from CLAMMS installation directory
#17
lakhujanivijay
opened
5 years ago
1
Problem with export command on the CLAMMS documentation page
#16
lakhujanivijay
opened
5 years ago
0
creating QCs metrics file
#15
thedam
opened
6 years ago
2
Running sam_gatk_coverage_to_bed on gatk DOC files
#14
si3
opened
6 years ago
0
calc_window_mappability.py line 69 syntax error
#13
AlexGreiner
opened
6 years ago
1
Normalization creates outliers
#12
haraldgrove
closed
6 years ago
3
Typo
#11
micknudsen
closed
6 years ago
0
plotting fails
#10
inijman
opened
7 years ago
3
segmentation fault during coverage normalization
#9
inijman
closed
7 years ago
1
TypeError: 'NonType object has no attribute '__getitem__'
#8
stefandiederich
opened
7 years ago
2
sam_gatk_coverage_to_bed resulting in all 0's in last column
#7
drramki-chop
closed
7 years ago
2
call_cnv output .cnv.bed is empty
#6
yingchen69
opened
7 years ago
6
Memory errors while running 'call_cnv'
#5
vijaymp38
opened
7 years ago
4
The windows.bed is empty
#4
jacobhsu35
opened
8 years ago
1
nan in created model.bed?
#3
JMF47
opened
8 years ago
1
mappability 150bp reads
#2
wdecoster
opened
8 years ago
1
windows.bed
#1
arvkevi
closed
7 years ago
1