rheinbaylab / cDNA-detector

Detect and remove cDNA contamination in DNA sequencing data
BSD 3-Clause "New" or "Revised" License
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Converting tmp_chr into a string in the cdna-detector clean function #2

Open AnneMartinaKraus opened 2 years ago

AnneMartinaKraus commented 2 years ago

The cdna-detector clean function defined by: scripts/clean/remove_function.py throws an error for me when running different samples. I think it is because seqname is not converted into a string in line 46: tmp_region_name = tmp_chr + ':' + str(tmp_start) + '-' + str(tmp_end). Am I missing something that it doesn't work for me? Thank you!