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rhpvorderman
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sequali
Fast sequencing data quality metrics
GNU Affero General Public License v3.0
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Fix memory leaks found by asan
#148
rhpvorderman
closed
5 months ago
0
Release 0.8.0
#147
rhpvorderman
closed
5 months ago
0
Release 0.8.0
#146
rhpvorderman
closed
5 months ago
0
Add a citation file and do some slight documentation updates.
#145
rhpvorderman
closed
5 months ago
0
Make insert size code look slightly nicer.
#144
rhpvorderman
closed
5 months ago
0
Fix various bugs in insert size metrics.
#143
rhpvorderman
closed
5 months ago
0
Cache creating the sequence index
#142
rhpvorderman
closed
5 months ago
0
Calculate insert size metrics using read 1 and read 2 overlap
#141
rhpvorderman
closed
5 months ago
0
Add a citation info file or chapter
#140
rhpvorderman
closed
5 months ago
2
Add a paired-end mode to sequali
#139
rhpvorderman
closed
5 months ago
0
What's the meaning of adapter content?
#138
dudududu12138
opened
5 months ago
6
Add facilities for paired-end parsing
#137
rhpvorderman
closed
5 months ago
0
Prevent cache pollution by using non-temporal hints for count arrays
#136
rhpvorderman
closed
5 months ago
0
Make sequali paired-end aware
#135
rhpvorderman
closed
5 months ago
1
Release 0.7.1
#134
rhpvorderman
closed
5 months ago
0
Release 0.7.1
#133
rhpvorderman
closed
5 months ago
0
Explicitly test on macos-14
#132
rhpvorderman
closed
5 months ago
0
Make HTML reports HTML5 compliant
#131
rhpvorderman
closed
5 months ago
0
Release 0.7.0
#130
rhpvorderman
closed
6 months ago
0
Release 0.7.0
#129
rhpvorderman
closed
6 months ago
0
Improve the report with a sidebar and downloadable images
#128
rhpvorderman
closed
6 months ago
0
Rewrite ascii check so the compiler can auto vectorize.
#127
rhpvorderman
closed
6 months ago
0
Use testc instructions for clearer code
#126
rhpvorderman
closed
6 months ago
0
Enable aarch64 builds.
#125
rhpvorderman
closed
6 months ago
1
Check pedantic compilation works and compile for more platforms
#124
rhpvorderman
closed
6 months ago
0
Use AVX2 for kmer generation.
#123
rhpvorderman
closed
6 months ago
1
Use dispatch rather than compiling with different instructions
#122
rhpvorderman
closed
6 months ago
0
MultiQC integration improvement suggestion
#121
rhpvorderman
closed
4 months ago
7
Release 0.6.0
#120
rhpvorderman
closed
6 months ago
1
Release 0.6.0
#119
rhpvorderman
closed
6 months ago
0
Add links to documentation in the html report.
#118
rhpvorderman
closed
6 months ago
0
Move documentation to readthedocs
#117
rhpvorderman
closed
6 months ago
1
Add a readthedocs skeleton
#116
rhpvorderman
closed
6 months ago
0
Add a small table with >=QXX scores to the per sequence average quality report.
#115
rhpvorderman
closed
6 months ago
0
Remove unused C code.
#114
rhpvorderman
closed
6 months ago
1
Use UUU format to use less code
#113
rhpvorderman
closed
6 months ago
1
Use xopen's new functionality to properly open the progressbar
#112
rhpvorderman
closed
6 months ago
2
Per read quality score distribution table
#111
rhpvorderman
closed
6 months ago
0
Make deduplication module fingerprint adjustable.
#110
rhpvorderman
closed
6 months ago
1
Add used version to the html report.
#109
rhpvorderman
closed
6 months ago
0
Add new report
#108
rhpvorderman
closed
6 months ago
0
Release 0.5.1
#107
rhpvorderman
closed
6 months ago
0
Release 0.5.1
#106
rhpvorderman
closed
6 months ago
0
Fix bug in overrepresented sequence analysis.
#105
rhpvorderman
closed
6 months ago
1
Release 0.5.0
#104
rhpvorderman
closed
6 months ago
1
Use setuptools_scm to set the version.
#103
rhpvorderman
closed
6 months ago
0
Release 0.5.0
#102
rhpvorderman
closed
6 months ago
0
Base overrepresented sequence percentage on number of sampled sequences
#101
rhpvorderman
closed
6 months ago
1
Add a meta section for the JSON report for MultiQC.
#100
rhpvorderman
closed
6 months ago
1
Investigate byte pair encoding for less error-prone sequence classification.
#99
rhpvorderman
closed
4 months ago
3
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