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rhpvorderman
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sequali
Fast sequencing data quality metrics
GNU Affero General Public License v3.0
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Add example reports to README
#98
rhpvorderman
closed
7 months ago
0
Add example reports
#97
rhpvorderman
closed
7 months ago
2
ValueError: not enough values to unpack
#96
OZTaekOppa
closed
5 months ago
6
Add nanopore barcodes as contaminations
#95
rhpvorderman
closed
9 months ago
0
Multi-sample support and statistics
#94
marcelm
closed
4 months ago
9
Release 0.4.1
#93
rhpvorderman
closed
10 months ago
0
Release 0.4.1
#92
rhpvorderman
closed
10 months ago
0
Fix issue 90
#91
rhpvorderman
closed
10 months ago
0
IndexError if a later read was sequenced earlier
#90
marcelm
closed
10 months ago
3
Move documentation to readthedocs
#89
rhpvorderman
closed
6 months ago
0
_qc.pyi stub is not up to date.
#88
rhpvorderman
closed
6 months ago
0
Modern package layout centered around pyproject.toml and setuptools_scm
#87
rhpvorderman
closed
6 months ago
2
MultiQC integration
#86
rhpvorderman
closed
4 months ago
2
Release 0.4.0
#85
rhpvorderman
closed
10 months ago
0
Release 0.4.0
#84
rhpvorderman
closed
10 months ago
0
Fix issues with single nucleotide and empty reads in Illumina and Nanopore metadata modules.
#83
rhpvorderman
closed
10 months ago
0
Add a version command
#82
rhpvorderman
closed
10 months ago
0
Crash on empty read with metadata
#81
marcelm
closed
10 months ago
0
IndexError with single input read
#80
marcelm
closed
10 months ago
2
Add a --version command-line option
#79
marcelm
closed
10 months ago
0
Add an additional flag to allow users to provide their own adapters.
#78
rhpvorderman
closed
10 months ago
0
Release 0.3.0
#77
rhpvorderman
closed
10 months ago
0
Release 0.3.0
#76
rhpvorderman
closed
10 months ago
0
Better fingerprinting for nanopore duplication estimation
#75
rhpvorderman
closed
10 months ago
1
Require latest version of pygal to prevent errors when installing
#74
rhpvorderman
closed
10 months ago
0
Better adapter detection for nanopore probes.
#73
rhpvorderman
closed
10 months ago
1
Require pygal 3.0.3
#72
rhpvorderman
closed
10 months ago
0
Fingerprint might not work very well for nanopore reads
#71
rhpvorderman
closed
10 months ago
0
Add script to determine the best length and allowed errors for adapter probes.
#70
rhpvorderman
closed
10 months ago
0
Current adapter searcher does not work well for nanopore adapters
#69
rhpvorderman
closed
10 months ago
4
Pygal has some issues with proper installation.
#68
rhpvorderman
closed
10 months ago
2
Suggestion: Add a link to the homepage/repo to the report
#67
marcelm
closed
10 months ago
0
Run several test on complete application to catch errors.
#66
rhpvorderman
closed
10 months ago
1
Crash on empty read
#65
marcelm
closed
10 months ago
0
Crash on empty input
#64
marcelm
closed
10 months ago
0
Prevent zero divide errors
#63
rhpvorderman
closed
10 months ago
9
ZeroDivisionError
#62
marcelm
closed
10 months ago
1
Change the default fragment length
#61
rhpvorderman
closed
10 months ago
0
Release 0.2.0
#60
rhpvorderman
closed
10 months ago
0
Release 0.2.0
#59
rhpvorderman
closed
10 months ago
0
Make wording in Sequence Overrepresentation module more consistent.
#58
rhpvorderman
closed
10 months ago
0
Display the total sequences and the number of subsampled sequences as well as the sampling rate for overrepresented sequences.
#57
rhpvorderman
closed
10 months ago
0
Fix tuple unpacking bug by checking the number of parts first
#56
rhpvorderman
closed
10 months ago
1
Better styling for the report and CLI
#55
rhpvorderman
closed
10 months ago
0
Add the reverse complement of the canonical sequence in the overrepresented sequences table
#54
rhpvorderman
closed
10 months ago
0
Make threads configurable
#53
rhpvorderman
closed
11 months ago
1
make threads configurable through the CLI
#52
rhpvorderman
closed
11 months ago
0
Fix windows build bug
#51
rhpvorderman
closed
11 months ago
0
Release 0.1.0
#50
rhpvorderman
closed
11 months ago
0
Test on 3.12
#49
rhpvorderman
closed
11 months ago
0
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