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richelbilderbeek
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razzo
Research project by Giovanni Laudanno and Richel J.C. Bilderbeek
GNU General Public License v3.0
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Multiple TODO's in a chronolocal order
#351
Giappo
opened
5 years ago
5
Check pirouette MCMC chain length
#350
richelbilderbeek
closed
5 years ago
19
Check mbd.SimTrees
#349
richelbilderbeek
closed
5 years ago
2
Check ESSes versus number of taxa
#348
richelbilderbeek
closed
4 years ago
1
Rerun Giappo run: more qs
#347
richelbilderbeek
closed
4 years ago
5
Run Giappo params, crown age 8, 2 replicates, 10x MCMC chain length. 20200127
#346
richelbilderbeek
closed
4 years ago
9
Rerun: Giappo params, crown age 8, 20 replicates
#345
richelbilderbeek
closed
4 years ago
3
ooo
#344
Giappo
closed
5 years ago
0
Allow nodeSub to be used in pirouette properly
#343
richelbilderbeek
closed
4 years ago
2
mbd.TaxaAndMbdness loose dependency on razzo
#342
richelbilderbeek
closed
5 years ago
2
[RUNNING] Run with DNA length of 1000 again
#341
richelbilderbeek
closed
5 years ago
3
[RUNNING] Run with 20 replicates
#340
richelbilderbeek
closed
5 years ago
3
[RUNNING] Run with longer chain length, to increase ESS
#339
richelbilderbeek
closed
5 years ago
4
Add critereria to 'check_taxa_and_mbd_ness'
#338
richelbilderbeek
opened
5 years ago
0
Fix bug in 90_... script that produced a too high failure rate
#337
richelbilderbeek
closed
5 years ago
8
[CREATE FIGURES] Do Giappo run
#336
richelbilderbeek
closed
5 years ago
10
Develop
#335
Giappo
closed
5 years ago
0
[CREATE FIGURES] Run razzo with crown age = 6
#334
richelbilderbeek
closed
5 years ago
5
[CREATE FIGURES] Run razzo with crown age = 5
#333
richelbilderbeek
closed
5 years ago
4
[CREATE FIGURES] Run razzo with crown age = 4
#332
richelbilderbeek
closed
5 years ago
3
[CREATE FIGURES] Run razzo with crown age = 3
#331
richelbilderbeek
closed
5 years ago
4
[CREATE FIGURES] Run razzo with crown age = 2
#330
richelbilderbeek
closed
5 years ago
5
[CREATE FIGURES] Run razzo with crown age = 1
#329
richelbilderbeek
closed
5 years ago
3
Make verdict per parameter setting
#328
Giappo
closed
4 years ago
2
Check ESSes versus MBD params
#327
Giappo
closed
4 years ago
6
[Conclusion: more taxa, lower ESS] Check ESSes versus number of taxa
#326
Giappo
closed
5 years ago
4
Delete run 20190801
#325
richelbilderbeek
closed
5 years ago
1
Run: Giappo params for range of different tree sizes
#324
richelbilderbeek
opened
5 years ago
1
Do not vary q if nu == 0
#323
richelbilderbeek
closed
5 years ago
1
Determine optimal parameter settings
#322
Giappo
closed
4 years ago
11
Show percentage of failed simulations in overview
#321
richelbilderbeek
closed
5 years ago
3
Pirouette: last check and resubmission
#320
Giappo
closed
5 years ago
1
Show mutation rate in overview
#319
richelbilderbeek
closed
5 years ago
2
Show nus in overview
#318
richelbilderbeek
closed
5 years ago
2
Illustrate pirouette by doing an experiment with a Yule tree prior on BD tree
#317
richelbilderbeek
closed
4 years ago
2
Decide: do run with Yule generative and twin tree for zero extinction rate?
#316
richelbilderbeek
closed
4 years ago
2
Do run with shorter DNA alignment of 500 nucleotides
#315
richelbilderbeek
closed
5 years ago
3
100 pi!
#314
richelbilderbeek
closed
5 years ago
0
Process feedback Rampal on pirouette_article
#313
richelbilderbeek
closed
5 years ago
5
Develop
#312
Giappo
closed
5 years ago
0
Merge pull request #310 from richelbilderbeek/giovanni
#311
Giappo
closed
5 years ago
0
Giovanni
#310
Giappo
closed
5 years ago
0
pippo
#309
Giappo
closed
5 years ago
0
Bug in pir_params$experiments[[1]]$beast2_options$beast2_path
#308
Giappo
closed
5 years ago
2
pb
#307
Giappo
closed
5 years ago
0
Merge pull request #305 from richelbilderbeek/giovanni
#306
Giappo
closed
5 years ago
0
Giovanni
#305
Giappo
closed
5 years ago
0
pippobaudo
#304
Giappo
closed
5 years ago
0
Make pilot run schedule
#303
richelbilderbeek
closed
4 years ago
4
Do run with new mus [RUNNING]
#302
richelbilderbeek
closed
5 years ago
3
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