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rivas-lab
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nanopore
Tools for analysis of long-read sequencing data.
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Missing observation
#23
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yk-tanigawa
closed
7 years ago
yk-tanigawa
commented
7 years ago
current implementation in haplotype inference does not work properly with missing data
read_haplotype_dev
in this following note has ad-hock solution for this problem
https://github.com/rivas-lab/nanopore/blob/2d62b7a0ab9dd6bc67249ace1d888ae245bf454a/dev/scripts/20170213/20170213_Bayesian_online_inference_of_haplotype.ipynb
Basically, I need to re-write the whole pipeline in fully object-oriented style so that I can treat each read / mapped fragment independently.
yk-tanigawa
commented
7 years ago
I have a new pipeline now
read_haplotype_dev
in this following note has ad-hock solution for this problem