nanopore

Tools for analysis of long-read sequencing data.

Directory Structure

• notes: laboratory notebook
• scripts: sbatch scripts

Dependencies

software packages

• python 2.7
• PLINK 2.0 alpha with Python API
  • https://www.cog-genomics.org/plink/2.0/
• pysam
  • https://github.com/pysam-developers/pysam