Missing medication (MED) phenotypes

rivas-lab / ukbb-tools

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

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Missing medication (MED) phenotypes #7

Open maguirre1 opened 5 years ago

maguirre1 commented 5 years ago

There is likely an error in MED.py causing certain medication codes to be skipped. See issue #4. Data can be found at $OAK/users/magu/repos/rivas-lab/in_old_not_tools.txt

yk-tanigawa commented 5 years ago

the original files are in /oak/stanford/groups/mrivas/private_data/ukbb/16698/phe/ukb9797_20170827_20003/

One can use ID conversion script /oak/stanford/groups/mrivas/ukbb24983/ukb24983_16698_mapping.sh for now