This repository contains our complete set of tools for preprocessing, quality control, and preliminary analyses on UK Biobank data. There is a folder in the repo per set of methods as defined in the Table of Contents below. Each subdirectory has a README.md file that should be read before use. These files detail how to use all files within the directory.
ukbb-tools
module on SherlockAll this code has been ported to a module on Sherlock. Click for more details on how to load and use this module.
There is an updater script that pushes your current directory - use with appropriate caution, as it takes the master
branch - and makes it a version of the module. The only argument for the updater is a date; this is used as a version label.
Example Usage:
bash ukbb-tools.module.updater.sh 20200225