-
Hello,
Thank you for this software! When I was running using `outcome=dx` and `predictors=names(phenotypes)[-1] ` I did _not_ specify anything about `additive.genotypes=FALSE` because I expected thi…
-
To generate a PheWAS plot, we need to run https://github.com/EngreitzLab/gene_network_evaluation/blob/main/src/plotting/plot_gwas_enrichment.py#L10.
To avoid extra computation in the dashboard, we …
-
Hi, I was trying to run the test.BXD() function within the "BXD-utils.R" script, but get the following error:
`source("BXD-utils.R")`
`test.BXD()`
`Error in plot.phewas(scores, bxd.phenosomes,…
-
It seems to have some problem when I tried to run the app with 'meToolkit' R package.
As the figure shows, the display broad shows some functions cannot be found.
I would like to know what might be …
-
Hello,
I have been using your PheTK tool for my thesis (thank you by the way it is great). The issue I am having is that with some of my analyses there are a few values that have very intense negativ…
-
Hello!
Currently working on generating PheWAS for 4 variants. Patients with two of the variants are homozygous (2), heterozygous(1), or controls (0) and PheWAS generates stats and the plot.
Howe…
-
On Manhattan Plot page when you click a variant have an option to go eitherto the LZ page or to the PheWAS page (to make navigation to the PheWAS plot less clunky).
-
bugs
- [x] says 0 patients loaded when loading no 0 pateitns
- [x] delete breaks app
- [x] naming still wrong, breaks operations
- [x] exclude endpoitns not working
enhace
- [x] Phewas matc…
-
Not sure why but the latest build has broken code filtering via the dropdown table and the network plot. Probably has something to do with migrating to meToolkit but needs investigation.
-
Hi Jinghua,
I am wondering do you have script for permutation test for pheWAS analysis to decrease statistcal burden for multiple test correction?
Thanks
Shicheng