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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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Hi,
I noticed that some studies consider a situation where two traits have been measured in two distinct datasets of unrelated individuals. However, I wanna use this method to do colocalization wit…
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when use code to liftover to hg38,
here is my code:
python /public/home/qihangm/sp.twas/summary-gwas-imputation-master/src/gwas_parsing.py \
-gwas_file /public/home/qihangm/sp.twas/gwas/cp/finnge…
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Creating a ticket to follow up on the GWAS function to be called in bioflow :) would the end of May be a realistic deadline?
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I've followed previous advice of running the single trait MTAG to work out the factor that the MTAG beta's and SE's need to be multiplied by to compare to the GWAS results.
The mean factor (MTAG_beta…
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Hi,
I previously already used **Pheweb** to process some large GWAS files. Now my project manager decided to **rename** some of the input GWAS files, for example, renaming a **LDL.gwas.gz** file…
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This summary statistics file is missing two mandatory columns: _beta_ and _standard_error_, so should not meet the GWAS-SSF format. I also pushed it through validation manually. I would therefore expe…
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Hi,
Thanks for the invaluable tools and tutorial resources you provided!
I am currently working with imputed data from the UK Biobank, and I have encountered a challenge regarding the storage si…
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Similar to the work on variant index (#3350), we would like to serve a `gwas_study_index` dataset through OS + API.
This dataset is created by different upstream ETL processes ([gentropy](https://g…
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This is my command:
!python /Users/halk/MetaXcan/software/SPrediXcan.py \ --model_db_path /Users/halk/Downloads/eqtl/mashr/mashr_Whole_Blood.db \ --covariance /Users/halk/Downloads/eqtl/mashr/mas…