chr1swallace coloc issues

chr1swallace / coloc

Repo for the R package coloc

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issues

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Add the ability to use variant-specific prior probabilities

#167 jeffreypullin opened 11 hours ago
0
error for coloc input datacheck

#166 forevertl opened 3 weeks ago
0
Question about Using `Effective Sample Size` vs `Observed Sample Size` for Coloc Analysis

#165 laleoarrow opened 4 weeks ago
0
Update susie.R to retain dimnames in single-variant edge-case

#164 cfbeuchel closed 1 month ago
3
runsusie() error with convergence

#163 jvalliere opened 1 month ago
1
The minimum number of specific gene eQTLs included in the COLOC analysis?

#162 lttlttlttH closed 2 months ago
0
Why is the PP.H4.abf result of res$summary different from the maximum PP.H4 in res$results?

#161 dqq0404 opened 2 months ago
3
Error in coloc.susie ()

#160 Huiflorazhan opened 2 months ago
2
coloc.abf and check_dataset returen "missing value where TRUE/FALSE needed"

#159 huntPis opened 2 months ago
1
NULL Result from coloc.susie

#158 htqqdd opened 2 months ago
0
Is the distribution of effect size estimates specifically and strictly required to follow Normal Distribution?

#157 EthanZhaoChem opened 3 months ago
0
How are representative hits chosen in results summary table?

#156 dtaylo95 opened 3 months ago
0
Add new_file.txt

#155 ramin777777 closed 11 hours ago
2
corrected credible.sets function for top SNP

#154 GRealesM closed 2 months ago
0
added function to extract credible sets

#153 GRealesM closed 3 months ago
0
Added credible sets function

#152 GRealesM closed 3 months ago
0
How to interpret the results of susie summary？

#151 Leweibo opened 3 months ago
3
The pre-process of QTL-GWAS colocalisation

#150 ttongyyang opened 3 months ago
3
"cc" and "quant" variables effect size

#149 ariadnacilleros closed 3 months ago
2
Add quiet=FALSE to coloc.abf()

#148 oborisov opened 3 months ago
0
coloc.susie returns NA results without error message

#147 zhilizheng closed 2 months ago
3
[Question] Calculating coloc.abf PP.H4.abf

#146 ctat41 closed 4 months ago
0
Error when running `check_dataset()`

#145 martaalcalde closed 5 months ago
3
Add website to DESCRIPTION

#144 olivroy closed 5 months ago
0
Add check for infinite values in beta/varbeta

#143 jeffreypullin closed 5 months ago
0
runsusie and susieR results differ

#142 maguileraf opened 7 months ago
8
coloc.abf error

#141 maguileraf closed 7 months ago
3
Setting per-SNP priors to maintain per-hypothesis priors when number of SNPs is large?

#140 porchard opened 7 months ago
0
Warning messages:1: In adjust_prior(p1, nrow(df1), "1") : p1 * nsnps >= 1, setting p1=1/(nsnps + 1)；2: In adjust_prior(p2, nrow(df2), "2") : p2 * nsnps >= 1, setting p2=1/(nsnps + 1)

#139 Seanm818 opened 7 months ago
0
description errors

#138 mocksu opened 8 months ago
0
Summary stats of two traits are from the same dataset

#137 Sheeya-Dong closed 7 months ago
6
XtX is not symmetric

#136 mocksu closed 7 months ago
1
Error when running check_dataset

#135 adoostparast opened 8 months ago
1
Add RStudio related files

#134 jeffreypullin closed 11 hours ago
2
Error if beta and/or varbeta contain `Inf`

#133 oborisov closed 5 months ago
5
LD matrix on SuSIE_coloc

#132 Zhangzzzzzy closed 9 months ago
7
coloc.abf

#131 MoMaz123 opened 9 months ago
1
Question on "First: select the SNPs to study."

#130 anbai106 opened 9 months ago
0
How to determine N for runsusie (each SNP with different N value)

#129 shannjiang opened 10 months ago
0
error in check_dataset: duplicated SNPs

#128 PyunJung-Min opened 10 months ago
4
length of snp vector should be 1 less than ncol(res$lbf_variable)

#127 shannjiang opened 11 months ago
6
runsusie error report: Error in (function (z, R, n, bhat, shat, var_y, z_ld_weight = 0, estimate_residual_variance = FALSE, : The dimension of R (0 x 0) does not agree with expected (500 x 500)

#126 phyliciasy opened 11 months ago
2
object 'LD' not found in installation (build_vignettes=TRUE)

#125 bbb801 opened 11 months ago
4
Query about eQTL summary selection for coloc analysis

#124 TaoShiyue opened 1 year ago
0
GWAS-GWAS colocalisation

#123 Liuyh275 opened 1 year ago
6
Summary from coloc.susie is missing pairwise comparisons between credible sets?

#122 char4816 opened 1 year ago
0
coloc.susie detected high PP.H4.abf but the result does not make sense

#121 catheriz opened 1 year ago
0
coloc error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) :NA/NaN/Inf in 'x'

#120 forevertl opened 1 year ago
0
Sample size (N or n) not recognised by coloc.susie

#119 ChrisShore closed 1 year ago
1
prepare the data structure for coloc.abf and loop for multiple variants running together

#118 manL23 opened 1 year ago
0