issues
search
chr1swallace
/
coloc
Repo for the R package coloc
138
stars
44
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error when running COLOC
#117
smsinks
opened
1 year ago
2
Questions about the coloc hypotheses
#116
mocksu
opened
1 year ago
0
How to construct a dataset for coloc analysis?
#115
mocksu
closed
1 year ago
6
Colocalization of eQTL and GWAS
#114
cy6n
opened
1 year ago
5
Using coloc for conditionally independent eQTLs in the HLA region
#113
joycekang
opened
1 year ago
3
Interpretation on SNP.PP.H4
#112
zl2860
opened
1 year ago
2
coloc.abf result: unexpectedly high PP.H4.abf
#111
QingningWang2022
opened
1 year ago
4
Results from coloc.abf
#110
Duhh56
opened
1 year ago
3
Can the LD matrix have more SNPs in it than the merged GWAS-eQTL file?
#109
HKJ396
closed
1 year ago
0
Varbeta for eQTL and GWAS dataset
#108
HKJ396
closed
1 year ago
5
N argument missing when calling susieR::susie_rss()
#107
AMCalejandro
opened
1 year ago
20
Bug in code to set up sample size argument to pass to susie_rss
#106
nshrine
opened
1 year ago
1
res$summary shows PP.H2.abf=1 AND PP.H4.abf=1
#105
zainomarali
closed
1 year ago
4
"prior variance is unreasonably large" error when using runsusie() with a "cc" type dataset.
#104
abucai
opened
1 year ago
1
coloc.susie: warning about providing sample size
#103
nshrine
closed
1 year ago
7
Question about sdY
#102
maegsul
opened
1 year ago
1
MAF score from GWAS results using COLOC.susie as well as LD matrix question
#101
HKJ396
closed
1 year ago
12
Discordant output from coloc.abf with beta/varbeta input vs estimation from p-value input
#100
ds763
closed
1 year ago
3
PP global H4 vs PP snp H4
#99
giuseppe-fanelli
closed
1 year ago
1
How to interpret coloc.susie results with two different variants in low LD?
#98
wonjikim11
closed
1 year ago
6
Output returns NaN
#97
marielohcs
closed
1 year ago
1
Error when using coloc 5.2.0 version
#96
JFF1594032292
closed
1 year ago
11
coloc.signals with 'cond' method is nto working properly
#95
npirastu
closed
1 year ago
7
Runsusie returns null credible set
#94
jeji0209
closed
2 years ago
6
HLA imputation and SUSIE
#93
Richard-Packer
closed
1 year ago
1
Error installing coloc
#92
JonnyBaseball
closed
1 year ago
1
Error in if (min(p) > warn.minp) warning("minimum p value is: ", format.pval(min(p)),
#91
juliandwillett
closed
1 year ago
1
runsusie: taking too much iterations to reach convegence
#90
zillurbmb51
closed
1 year ago
9
Issue with plotting
#89
bethleegy
closed
1 year ago
4
Run coloc.abf for multiple loci together with for loop or other alternatives
#88
zillurbmb51
closed
2 years ago
3
How to get gene level H4?
#87
mhaiyue
closed
1 year ago
5
Error while running moloc
#86
JayshreeAdvani
closed
2 years ago
6
How to find H0 to H3 from the coloc.abf output for each snp
#85
zillurbmb51
closed
2 years ago
1
How to interpret coloc.susie results with two different variants but has very high PP.H4.Prob?
#84
XiaoweiHu-Stat
closed
2 years ago
3
coloc.abf with eQTLgen and GWAS data errors
#83
lalagkaspn
closed
2 years ago
8
coloc.detail, coloc.process function not found (coloc 5.1.2)
#82
zillurbmb51
opened
2 years ago
5
Preparing data for 'CC' and 'quant' traits, tried but getting error
#81
zillurbmb51
closed
2 years ago
10
Update sensitivity.R
#80
fromOmelas
opened
2 years ago
3
error in coloc.abf
#79
hust-yyan
closed
2 years ago
1
Deprecate runsusie() arg p
#78
jdblischak
closed
2 years ago
2
Clarification of `null_weight` argument passed to `susie_rss()`
#77
jdblischak
closed
2 years ago
4
SNP.PP.H4
#76
Filago4
closed
2 years ago
1
dependency irlba requires R >= 3.6.2
#75
mcolosimo-p4
closed
2 years ago
1
A possible typo in "data structure" wiki?
#74
Ojami
closed
2 years ago
1
Little confusion about required coloc inputs
#73
Filago4
closed
2 years ago
5
check_dataset
#72
MoMaz123
closed
2 years ago
17
cannot run Susie for colocalisation between GWAS and eQTL
#71
agilly
closed
2 years ago
5
Moves testing (including R cmd check) to github actions
#70
pc494
closed
1 year ago
1
R cmd check
#69
pc494
closed
2 years ago
2
question about PP.H3
#68
EchoLee0925
closed
2 years ago
15
Previous
Next