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chr1swallace
/
coloc
Repo for the R package coloc
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Little confusion about required coloc inputs
#73
Filago4
closed
2 years ago
5
check_dataset
#72
MoMaz123
closed
2 years ago
17
cannot run Susie for colocalisation between GWAS and eQTL
#71
agilly
closed
2 years ago
5
Moves testing (including R cmd check) to github actions
#70
pc494
closed
1 year ago
1
R cmd check
#69
pc494
closed
2 years ago
2
question about PP.H3
#68
EchoLee0925
closed
2 years ago
15
Creating an issue template
#67
pc494
closed
1 year ago
0
fix #65
#66
chr1swallace
closed
2 years ago
1
coloc.abf returns NaN for all posteriors
#65
Bonder-MJ
closed
2 years ago
5
"prior variance is unreasonably large" error when using runsusie()
#64
JFF1594032292
closed
2 years ago
7
choosing an optimal LD reference panel for multi-ancestry GWAS
#63
ccrobertson
closed
2 years ago
4
Update checks
#62
jdblischak
closed
2 years ago
0
PP.H4 results for coloc.susie()
#61
JFF1594032292
closed
2 years ago
2
Encounter "dataset 1: lengths of inputs don't match error"
#60
shangl02
closed
2 years ago
4
LD matrix
#59
riesmeijersa
closed
2 years ago
13
Installation with install_github
#58
pcarbo
closed
2 years ago
0
Warning in coloc.susie
#57
Zepeng-Mu
closed
3 years ago
5
Checking whether dataset is a list
#56
Zepeng-Mu
closed
3 years ago
0
Susie parameters
#55
Zepeng-Mu
closed
2 years ago
1
coloc.susie vs coloc.abf
#54
arushiv
closed
2 years ago
2
Sensitivity function returning non-numeric matrix extent when running with non-default p1,p2, and p12
#53
isaacg322
opened
3 years ago
10
Set the maximum number of iterations to a lower amount
#52
clagiamba
closed
2 years ago
7
Inconsistent test data results with demo by using runsusie()
#51
shengzheBian
closed
2 years ago
2
`runsusie` for a dataset without varbeta
#50
daria-nikanorova
opened
3 years ago
9
error when running coloc.SuSie
#49
schavezchavez
closed
3 years ago
6
merge susie branch to main
#48
chr1swallace
closed
3 years ago
0
Output SNP.PP.H3 from coloc.abf
#47
alxdrcirilo
closed
2 years ago
4
problem with credible sets in susie branch
#46
matei-ionita
closed
3 years ago
5
Coloc.abf does not output probabilities in R
#45
mirunabarbu8
closed
3 years ago
7
error in coloc.signals
#44
valborgg
closed
3 years ago
1
Confusing results when using beta and varbeta in coloc.abf()
#43
JFF1594032292
closed
3 years ago
16
Error when using coloc.signals
#42
nbbarrientos
closed
3 years ago
6
error using finemap.signals for method 'cond'
#41
Poojaa-srinivasa
closed
3 years ago
1
Separate MAFs for cases and controls
#40
minigel
closed
3 years ago
11
Update split.R
#39
Joannavonberg
closed
3 years ago
1
Simulation example on coloc conditioning vignette not working
#38
JesseRop
closed
3 years ago
8
error when using finemap.abf() function
#37
schavezchavez
closed
3 years ago
1
question regarding beta's
#36
schavezchavez
closed
4 years ago
2
Matching variants between phenotypes
#35
basel-maher
closed
3 years ago
1
a bug when using 'mask'
#34
stivenming
closed
3 years ago
6
About Differing N and s Parameters & Matching Two Datasets
#33
maegsul
closed
2 years ago
5
coloc.abf: priors p value and making sense of output?
#32
complexgenome
closed
4 years ago
2
Implementing coloc's conditional analysis in moloc
#31
gentryjl
closed
3 years ago
1
coloc.signals requires sdY even when MAF and N is given
#30
Zepeng-Mu
closed
4 years ago
4
Issue with the `est_cond` function when running conditional coloc
#29
adriaan-vd-graaf
closed
4 years ago
6
coloc.signals asks for N when s is present
#28
Zepeng-Mu
closed
4 years ago
2
Some small feedback
#27
remlapmot
closed
3 years ago
1
adding z-score only analysis
#26
jinshaw16
opened
4 years ago
0
Condmask
#25
chr1swallace
closed
4 years ago
0
finemap.signals without beta and varbeta
#24
silvakasela
closed
4 years ago
7
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