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rjpbonnal
/
bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
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Error during installation
#74
MikhailBazhenov
opened
1 year ago
1
Is this project using FFI? (Question about current status)
#73
kojix2
closed
3 years ago
2
installing while offline
#72
moskyt
opened
5 years ago
2
Parsing Alignment Object
#71
jpearl01
opened
6 years ago
3
Update license in gemspec generator to match LICENSE.txt file
#70
andrew
closed
6 years ago
1
Merge to get back to the main master
#69
homonecloco
closed
7 years ago
0
Supported ruby versions undeclared in gemspec, ext/Rakefile unsupported with ruby 2.4.2
#68
MatthewRalston
opened
7 years ago
1
samtools sourceforge download fails from open-uri: 'redirection forbidden'
#67
MatthewRalston
opened
7 years ago
5
ld returning exit 1 from GCC while compiling extension
#66
MatthewRalston
opened
7 years ago
0
Samtools for windows need to have the region given in double quotes, …
#65
moskyt
closed
6 years ago
0
support for samtools on windows
#64
moskyt
closed
6 years ago
4
More unit tests
#63
homonecloco
closed
8 years ago
0
Fastadb local
#62
homonecloco
closed
8 years ago
0
Review the new options for sort
#61
homonecloco
opened
8 years ago
0
index_stats is not working in 2.3.5
#60
MatthewRalston
opened
8 years ago
5
bio-samtools fail to compile samtools binary due to non-allowed redirection
#59
shyamrallapalli
closed
8 years ago
3
raise a custom SamException instead of Exception …
#58
moskyt
closed
8 years ago
0
wrap filenames in quotes when running samtools
#57
moskyt
closed
8 years ago
0
Open uri redirections
#56
stveep
closed
8 years ago
1
Helios
#55
homonecloco
closed
9 years ago
0
Added documentation on how to integrate with travis as a dependency. …
#54
homonecloco
closed
9 years ago
0
Helios
#53
homonecloco
closed
9 years ago
0
Installing with ruby 2.2 fails "uninitalized constant Config"
#52
MatthewRalston
closed
9 years ago
4
View and fetch commands don't retrieve region correctly.
#51
MatthewRalston
closed
8 years ago
6
Bioruby-samtools fails to install samtools
#50
MatthewRalston
closed
9 years ago
1
Updated to support ruby 2.2
#49
homonecloco
closed
9 years ago
0
Bugfixes
#48
homonecloco
closed
9 years ago
0
Bio::DB::Sam class fetch/view does not recognize chromosomes; samools executes correctly.
#47
MatthewRalston
closed
9 years ago
6
Region loading issue
#46
MatthewRalston
closed
9 years ago
0
Undefined variable "files" in Bio/DB/Sam.rb:28 in initialize
#45
MatthewRalston
closed
9 years ago
4
Update to samtools 1.2
#44
homonecloco
closed
8 years ago
0
Merged code of release 2.2.0
#43
homonecloco
closed
9 years ago
0
Missing SAMtools methods
#42
ethering
opened
9 years ago
1
fixmate parameters
#41
ethering
opened
9 years ago
1
index fails using samtools v1.0+ when providing .bai filename
#40
ethering
opened
9 years ago
4
rmdups fails using samtools v1.0+
#39
ethering
closed
8 years ago
6
Added a VCF to_s method
#38
ethering
closed
9 years ago
4
Merge of version 2.0.6
#37
homonecloco
closed
10 years ago
0
Re-wrote methods to remove some opts.
#36
ethering
closed
10 years ago
2
Updated tutorial and added new methods and tests
#35
ethering
closed
10 years ago
5
Merge of version 2.0.5
#34
homonecloco
closed
10 years ago
0
Updated code to make plotting coverage more flexible
#33
ethering
closed
10 years ago
0
Minor bugfixes
#32
homonecloco
closed
10 years ago
0
Release of samtools 2
#31
homonecloco
closed
10 years ago
1
Rewrite no wraps
#30
ethering
closed
10 years ago
3
convert readme to markdown and add more example from tutorial.html
#29
Jirapong
closed
10 years ago
2
remove Gemfile.lock from gemspec
#28
Jirapong
closed
10 years ago
0
Update to samtools 0.1.19 and tested on ruby 2.1.0
#27
homonecloco
closed
10 years ago
0
Replace 'curses' with 'ncurses' for building samtools.
#26
yp
closed
10 years ago
0
iterating alignments
#25
wwood
closed
9 years ago
4
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