Error during processing vcf file.

[Alex-Karmazin]

I start job with file that was succesfuly processed with opencravat. But with oak var 2.5.10 it get folowing error: """ 2022/08/01 20:53:11 oakvar C:\ProgramData\Anaconda3\envs\openCravatPlugin\Scripts\oc run C:\open-cravat\jobs\default\220801-205305\antonkulaga_38_all_rsid_chrompos.vcf -a dbsnp prs -l hg38 --skip reporter --temp-files 2022/08/01 20:53:11 oakvar started: Mon Aug 1 20:53:11 2022 2022/08/01 20:53:11 oakvar conf file: None 2022/08/01 20:53:12 oakvar input files: C:\open-cravat\jobs\default\220801-205305\antonkulaga_38_all_rsid_chrompos.vcf 2022/08/01 20:53:12 oakvar input assembly: hg38 2022/08/01 20:53:12 oakvar version: oakvar 2.5.10 C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar 2022/08/01 20:53:12 oakvar version: dbsnp 154.0.2 C:\dev\python\openCravatPlugin\modules\annotators\dbsnp 2022/08/01 20:53:12 oakvar version: prs None prs 2022/08/01 20:53:12 oakvar version: hg38 1.10.2 C:\dev\python\openCravatPlugin\modules\mappers\hg38 2022/08/01 20:53:12 oakvar.converter started: Mon Aug 1 20:53:12 2022 2022/08/01 20:53:12 oakvar.converter Input file(s): C:\open-cravat\jobs\default\220801-205305\antonkulaga_38_all_rsid_chrompos.vcf 2022/08/01 20:53:17 oakvar.converter input format: vcf 2022/08/01 20:53:17 oakvar.converter Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\base\converter.py", line 26, in convert_file yield ln, line, self.convert_line(line) File "C:\dev\python\openCravatPlugin\modules\converters\vcf-converter\vcf-converter.py", line 216, in convert_line raise BadFormatError('All samples have the reference genotype.') oakvar.exceptions.BadFormatError: All samples have the reference genotype. 2022/08/01 21:07:51 oakvar.converter error lines: 1418835 2022/08/01 21:07:51 oakvar.converter finished: Mon Aug 1 21:07:51 2022 2022/08/01 21:07:51 oakvar.converter num input lines: 4660909 2022/08/01 21:07:51 oakvar.converter runtime: 874.169 2022/08/01 21:07:52 oakvar num_workers: 7 2022/08/01 21:07:57 oakvar input line chunksize=675344 total number of input lines=4727413 number of chunks=7 """

[Alex-Karmazin]

Also a got such traceback in console during this error: """ Running gene mapper... multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\multiprocessing\pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\base\mp_runners.py", line 73, in mapper_runner output = genemapper.run_as_slave(pos_no) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\base\mapper.py", line 316, in run_as_slave for ln, line, crv_data in self.reader.loop_data(): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\inout.py", line 146, in loop_data for lnum, toks in self._loop_data(): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\inout.py", line 212, in _loop_data csv.field_size_limit(sys.maxsize) OverflowError: Python int too large to convert to C long """

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\runpy.py", line 197, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\Scripts\oc.exe__main.py", line 7, in File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar__main.py", line 169, in main handle_exception(e) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar__main__.py", line 151, in handle_exception raise e File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\main__.py", line 162, in main ret = args.func(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\decorators.py", line 5, in change_args_for_cli ret = func(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 7, in cli_run ret = run(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\decorators.py", line 32, in run_cli_func handle_exception(e) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\main.py", line 151, in handle_exception raise e File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\decorators.py", line 24, in run_cli_func ret = func(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 43, in run return run(module.main()) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\nest_asyncio.py", line 38, in run return loop.run_until_complete(task) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\nest_asyncio.py", line 81, in run_until_complete return f.result() File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\asyncio\futures.py", line 201, in result raise self._exception File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\asyncio\tasks.py", line 256, in step result = coro.send(None) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 531, in main raise self.exception File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 469, in main await self.do_step_mapper() File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 322, in do_step_mapper self.run_genemapper_mp() File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 1296, in run_genemapper_mp job.get() File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\multiprocessing\pool.py", line 771, in get raise self._value OverflowError: Python int too large to convert to C long """

[rkimoakbioinformatics]

@Alex-Karmazin Thanks. I'll look into it. The BadFormatError message is a misleading message which was suppressed by OpenCRAVAT. The overflow error was caused by the combination of a fix to handle very long annotation by some modules (thus, current OpenCRAVAT will err with such input and modules) and Python's using different maximum integer value in different systems. Both have been corrected in oakvar 2.5.11 I have just released. Please try that one. Also, vcf-converter 2.1.6 should be installed. Below are the steps.

pip install -U oakvar
ov store fetch
ov module update vcf-converter 

[antonkulaga]

here is the input file that caused that issue https://drive.google.com/file/d/1ebb1-opKU4F6UFLUsxyQnmjVCgtWeiYd/view?usp=sharing

[rkimoakbioinformatics]

@antonkulaga Thanks. I have confirmed with your input file, oakvar v2.5.12, and vcf-converter 2.1.6 that the reported errors do not occur anymore. Let me know if it works for you as well.

[Alex-Karmazin]

I got many such errors: """ Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\websubmit\websubmit.py", line 687, in get_jobs job = await get_job(request, job_id) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\websubmit\websubmit.py", line 662, in get_job LooseVersion(job.info["open_cravat_version"]) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\distutils\version.py", line 52, in lt c = self._cmp(other) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\distutils\version.py", line 339, in _cmp if self.version == other.version: AttributeError: 'LooseVersion' object has no attribute 'version' """ But they not interrupt process, so it is not critical for now. Thank you for quick support.

[rkimoakbioinformatics]

@Alex-Karmazin What is the Python version in your environment?

[Alex-Karmazin]

python 3.9

[rkimoakbioinformatics]

@Alex-Karmazin Thanks. Python 3.9 seems fine for using LooseVersion, but anyway LooseVersion is being deprecated in Python anyway, so I replaced it with packaging.version which is recommended by Python. The latest oakvar should not have that error.

[Alex-Karmazin]

I got some new tracebacks: """ Running annotators... Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 297, in load_class module = import_module(module_name) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\importlib__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 984, in _find_and_load_unlocked ModuleNotFoundError: No module named 'prs' Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 297, in load_class module = import_module(module_name) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\importlib__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 984, in _find_and_load_unlocked ModuleNotFoundError: No module named 'prs'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 307, in load_class loader.exec_module(module) File "", line 846, in exec_module File "", line 982, in get_code File "", line 1039, in get_data FileNotFoundError: [Errno 2] No such file or directory: 'C:\dev\python\openCravatPlugin\prs\prs.py' Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 297, in load_class module = import_module(module_name) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\importlib__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "C:\dev\python\openCravatPlugin\modules\annotators\dbsnp\dbsnp.py", line 6, in from cravat.util import get_ucsc_bins, reverse_complement ImportError: cannot import name 'get_ucsc_bins' from 'cravat.util' (unknown location) Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 297, in load_class module = import_module(module_name) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\importlib__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "C:\dev\python\openCravatPlugin\modules\annotators\dbsnp\dbsnp.py", line 6, in from cravat.util import get_ucsc_bins, reverse_complement ImportError: cannot import name 'get_ucsc_bins' from 'cravat.util' (unknown location)

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 307, in load_class loader.exec_module(module) File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "C:\dev\python\openCravatPlugin\modules\annotators\dbsnp\dbsnp.py", line 6, in from cravat.util import get_ucsc_bins, reverse_complement ImportError: cannot import name 'get_ucsc_bins' from 'cravat.util' (unknown location) annotator(s) finished in 1.679s Running aggregator... Variants """

[Alex-Karmazin]

It seems my module that I'm working on "prs" did not load properly. But on opencravat it was working well.

[rkimoakbioinformatics]

@Alex-Karmazin I'll take a look.

[rkimoakbioinformatics]

@Alex-Karmazin Can you do ov system md and see if the output is a directory which has your psr module under annotators?

[Alex-Karmazin]

Yes it points to valid path. Here is this module if you need it. https://drive.google.com/file/d/1bKV_7AWKktXWB_aRtEt18UGyUSvchtA4/view?usp=sharing

[rkimoakbioinformatics]

On my system, prs module was successfully loaded and did not produce the module loading error. Just division by zero error was produced. What is the version obtained with ov version? The latest is 2.5.12.

[rkimoakbioinformatics]

@Alex-Karmazin Regarding the error with dbsnp, I have just published a new version 154.0.2.1 with a fix.

[Alex-Karmazin]

Now after I managed to update dbsnp I could come back to this issue. I have strange error: """ 2022/08/10 20:38:56 prs module loading error for prs Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 297, in load_class module = import_module(module_name) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\importlib__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 984, in _find_and_load_unlocked ModuleNotFoundError: No module named 'prs'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 306, in load_class loader.exec_module(module) File "", line 846, in exec_module File "", line 982, in get_code File "", line 1039, in get_data FileNotFoundError: [Errno 2] No such file or directory: 'C:\dev\python\openCravatPlugin\prs\prs.py'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\base\mp_runners.py", line 31, in annot_from_queue annotator_class = load_class(module.script_path, "Annotator") File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\util\util.py", line 308, in load_class raise ModuleLoadingError(module_name) oakvar.exceptions.ModuleLoadingError: module loading error for prs """ It is the same custom module for PRS but I did not know why it searching file for this path 'C:\dev\python\openCravatPlugin\prs\prs.py'. It may be cached somehow. There is no such path inside the code, and it was long ago when this path had any sense. Command "ov system md" has a valid path "D:\dev\oakVar\modules". Where I could find any clue why it search module in the old path?

[Alex-Karmazin]

Here is little bit more information: """ 2022/08/10 20:38:50 oakvar C:\ProgramData\Anaconda3\envs\openCravatPlugin\Scripts\oc run C:\open-cravat\jobs\default\220810-203847\longevity_snps_1000genom.vcf -a dbsnp prs -l hg38 --skip reporter --temp-files 2022/08/10 20:38:50 oakvar started: Wed Aug 10 20:38:49 2022 2022/08/10 20:38:50 oakvar conf file: None 2022/08/10 20:38:50 oakvar input files: C:\open-cravat\jobs\default\220810-203847\longevity_snps_1000genom.vcf 2022/08/10 20:38:50 oakvar input assembly: hg38 2022/08/10 20:38:50 oakvar version: oakvar 2.5.23 C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar 2022/08/10 20:38:50 oakvar version: dbsnp 154.0.2.1 D:\dev\oakVar\modules\annotators\dbsnp 2022/08/10 20:38:50 oakvar version: prs None C:\dev\python\openCravatPlugin\prs 2022/08/10 20:38:50 oakvar version: hg38 1.10.2 D:\dev\oakVar\modules\mappers\hg38 2022/08/10 20:38:50 oakvar.converter started: Wed Aug 10 20:38:50 2022 2022/08/10 20:38:50 oakvar.converter Input file(s): C:\open-cravat\jobs\default\220810-203847\longevity_snps_1000genom.vcf 2022/08/10 20:38:50 oakvar.converter version: vcf-converter==2.1.6 2022/08/10 20:38:50 oakvar.converter input format: vcf 2022/08/10 20:38:51 oakvar.converter error lines: 0 2022/08/10 20:38:51 oakvar.converter finished: Wed Aug 10 20:38:51 2022 2022/08/10 20:38:51 oakvar.converter num input lines: 2797 2022/08/10 20:38:51 oakvar.converter runtime: 0.303 2022/08/10 20:38:51 oakvar num_workers: 7 2022/08/10 20:38:51 oakvar input line chunksize=624 total number of input lines=4369 number of chunks=7 2022/08/10 20:38:55 oakvar num_workers: 7 """

[antonkulaga]

So far this issue is a blocker for our PRS module

[rkimoakbioinformatics]

ov run can accept the path to a module as an option to -a argument. For example, ov run input.vcf -a /path/to/prs. This way, testing and using custom modules outside of the system modules directory is easy. -a as a custom path has priority over -a as a module name.

Thus, if there is prs directory in the current working directory, the error can happen.

If there is no more prs in the current working directory and the error still occurs, this can happen if ov gui has been running while the custom prs directory was removed.

To test these possibilities:

• ov run ... -a prs command in a directory in which there is no prs directory
• Restarting ov gui in a directory in which there is no prs directory

Does any of the above make sense in your case?

[Alex-Karmazin]

Thank you, it helped. There was prs folder in my project where I put everything regarding this functionality. I just rename it and everything starts working. By the way in OakVar secondary_data structure is changed compared with OpenCravat. Do you plan to have backward compatibility, or it will be incompatible with it?

[rkimoakbioinformatics]

@Alex-Karmazin I plan to keep backward compatibility and thought that it has been kept. Can you describe the discrepancy a bit so that I can start investigation?

[Alex-Karmazin]

In OpenCravat I write secondary_data['dbsnp'][0]['rsid'] but now I have to change it to secondary_data['dbsnp']['rsid'] in order to get it working.

[rkimoakbioinformatics]

@Alex-Karmazin Ah, got it. I pushed a new release oakvar 2.5.27 which restored the backward compatibility. Please try that one with the old format for secondary_data.

[Alex-Karmazin]

Unfortunatly new errors appeared: """ No module named 'vcf' Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\runpy.py", line 197, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\ProgramData\Anaconda3\envs\cruise_misle\Scripts\oc.exe__main.py", line 7, in File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar__main.py", line 169, in main handle_exception(e) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\main.py", line 151, in handle_exception raise e File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\main__.py", line 162, in main ret = args.func(args) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\decorators.py", line 5, in change_args_for_cli ret = func(args) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\cli\run.py", line 7, in cli_run ret = run(args) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\decorators.py", line 32, in run_cli_func handle_exception(e) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\main.py", line 151, in handle_exception raise e File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\decorators.py", line 24, in run_cli_func ret = func(args) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\cli\run.py", line 43, in run return run(module.main()) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\nest_asyncio.py", line 35, in run return loop.run_until_complete(task) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\nest_asyncio.py", line 89, in run_until_complete return f.result() File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\asyncio\futures.py", line 201, in result raise self._exception File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\asyncio\tasks.py", line 256, in step result = coro.send(None) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\cli\run.py", line 531, in main raise self.exception File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\cli\run.py", line 468, in main await self.do_step_converter() File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\cli\run.py", line 299, in do_step_converter self.run_converter() File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\cli\run.py", line 1123, in run_converter self.numinput, self.converter_format = converter.run() File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\base\cravat_convert.py", line 517, in run converter.setup(f) # type: ignore File "D:\dev\oakVar\modules\converters\vcf-converter\vcf-converter.py", line 55, in setup import vcf ModuleNotFoundError: No module named 'vcf' Process Process-4: Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\multiprocessing\process.py", line 315, in _bootstrap self.run() File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\multiprocessing\process.py", line 108, in run self._target(*self._args, **self._kwargs) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\websubmit\websubmit.py", line 1148, in fetch_job_queue main_loop.run_until_complete(job_worker_main()) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\asyncio\base_events.py", line 647, in run_until_complete return future.result() File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\asyncio\futures.py", line 201, in result raise self._exception File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\asyncio\tasks.py", line 256, in __step result = coro.send(None) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\websubmit\websubmit.py", line 1125, in job_worker_main job_tracker.clean_jobs(None) File "C:\ProgramData\Anaconda3\envs\cruise_misle\lib\site-packages\oakvar\websubmit\websubmit.py", line 1080, in clean_jobs job_ids.remove(uid) ValueError: list.remove(x): x not in list """

[Alex-Karmazin]

After modules update, these errors disappears. But still it is incompatible with opencravat secondary_data['dbsnp'][0]['rsid'] is not working with [0] only secondary_data['dbsnp']['rsid'] works.

[rkimoakbioinformatics]

I see. Have you updated OakVar with "pip install -U oakvar" as well?

[Alex-Karmazin]

Yes now I have Version: 2.5.23

[antonkulaga]

@Alex-Karmazin just don't be lazy with updates, I am using 2.5.27 already

[Alex-Karmazin]

I updated to Version: 2.5.27 and now it is compatible with opencravat.