Mission

OakVar is a bridge between cutting-edge genomics research and everyday people.
OakVar democratizes access to genomics knowledge for all.

What it does

Annotate genomic variants with diverse annotation sources.
Make databases of annotated variants.
Query annotated variants with filter sets.
Make reports in diverse formats.
Visualize annotated variants with graphical user interface.
Works via CLI and GUI.
Easily develop, run, and distribute CLI and GUI genomics apps. OakVar acts as an operating system for genomics apps.
Connect genomic data to AI/ML models.

Internship

The main project will be OakVar. Full remote work. Unpaid position (no funding yet). Please send your application to info@oakbioinformatics.com.

Resources

Ready to start? OakVar Documentation_

.. _OakVar Documentation: https://docs.oakvar.com

Subscribe to the mailing list_: Be in the loop and notified of the new releases and news of OakVar.

.. _Subscribe to the mailing list: https://dashboard.mailerlite.com/forms/21170/56038572068701589/share

Medium: https://medium.com/oakvar

Discord: https://discord.gg/wZfkTMKTjG

Reddit: https://www.reddit.com/r/oakvar

Email: info@oakbioinformatics.com

Many Thanks to Our Sponsors

Organizational Sponsors

.. image:: https://dna-seq.github.io/dna-seq/just_dna_seq.png :width: 225 :alt: Just DNA-Seq :target: https://github.com/dna-seq

Individual Sponsors

.. image:: https://avatars.githubusercontent.com/u/110073399?v=4 :width: 50 :alt: RegenCenter :target: https://github.com/RegenCenter

OakVar is in CodeX

.. image:: https://storage.oakvar.com/oakvar-public/codex.png :width: 400 :alt: CodeX logo

License

OakVar is free to use for personal or research use in non-commercial activities by non-commercial entities. For other uses including commercial use by commercial entities, a paid license must be obtained. For full license information, see LICENSE_.

.. _LICENSE: https://github.com/rkimoakbioinformatics/oakvar/blob/master/LICENSE

rkimoakbioinformatics / oakvar