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rkimoakbioinformatics / oakvar

Genomic variant analysis platform
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minor bug with non-standard home folders #9

Closed antonkulaga closed 1 year ago

antonkulaga commented 2 years ago

On one of the machines where I tried to deploy oakvar it was trying to write /home/antonkulaga instead of real user directory that was parked in another place ( /data/users/antonkulaga ). I found a workaround (just made a simlink), so things work for me (no need to rush fixing it).

rkimoakbioinformatics commented 2 years ago

@antonkulaga I have just published oakvar v2.5.6, which can handle your use case, which is explained at https://rkimoakbioinformatics.github.io/oakvar/install/ (see near the bottom of the page). It can be done by setting an environment variable OV_ROOT_DIR (as in export OV_ROOT_DIR=/data/users/antonkulaga) before running ov system setup.

rkimoakbioinformatics commented 1 year ago

Closing for now. Let me know if this issue still exists.

antonkulaga commented 1 year ago

export OV_ROOT_DIR does not work with latest oakvar

rkimoakbioinformatics commented 1 year ago

Just released ov 2.8.20 which should work with OV_ROOT_DIR.