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rmhubley
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RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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Interpreting discrepancies between alignment (.align file) and annotation (.out) and understanding how IDs are assigned.
#212
agustin-bilat
closed
1 year ago
4
Continue with interrupted RepeatMasker run
#211
oushujun
closed
11 months ago
2
How to analyze RepeatProteinMask results
#210
LI-zijian1
closed
11 months ago
2
Fixed a minor issue with the configure script
#209
rmhubley
closed
1 year ago
0
Unable to configure search engine
#208
mundoctor
opened
1 year ago
10
ReleaseNotes for 4.1.5
#207
rmhubley
closed
1 year ago
0
4.1.5 Release
#206
rmhubley
closed
1 year ago
0
Unusual summary in .tbl
#205
tbusschau
closed
1 year ago
3
ProcessRepeats step of RepeatMasker is so slow
#204
xuxif
opened
1 year ago
1
Different hits to repeats between BLASTN and RepeatMasker
#203
skagawa2
closed
1 year ago
5
*** buffer overflow detected ***: trf terminated sh: line 1: 3142675 Aborted (core dumped)
#202
TobyBaril
closed
1 year ago
3
Discrepency about *.tbl, *.out
#201
longzhangnation
closed
1 year ago
1
Penelope elements missing from *.tbl and repeat landscapes
#200
TobyBaril
closed
1 year ago
2
TypeError: 'NoneType' object is not iterable error occurs when integrating dfam3.7 database and Repbase2018 database
#199
panpandzf
closed
1 year ago
12
Sync
#198
rmhubley
closed
1 year ago
0
get Motif from ID and Name
#197
MarineBergot
closed
1 year ago
7
perl ./configure Cannot Open DateRepeats: No such file or directory
#196
TobyBaril
closed
1 year ago
1
Illegal division by zero at RepeatMasker line 8162
#195
carsonhh
closed
1 year ago
3
Advice to remove annotated transposases
#194
V-JJ
closed
1 year ago
2
Does Dfam curated vs non-curated database affect the masking rate?
#193
V-JJ
closed
1 year ago
4
buffer overflow detected AND core dumped
#192
huanananan
closed
1 year ago
5
Problem with Dfam 3.7 famdb.py version
#191
JWDebler
closed
1 year ago
4
Cannot read .fa file
#190
NicMAlexandre
closed
1 year ago
2
Is it possible to regenerate Kimura distances from gff?
#189
lukesarre
closed
1 year ago
2
WUBlastXSearchEngine::setPathToEngine( path/blastx ): Cannot determine engine variant and version!
#188
Tianyou96
opened
1 year ago
4
the assumed repeatmasker installation directory does not appear to be correct
#187
chelisa
closed
1 year ago
1
Release 4.1.4
#186
rmhubley
closed
1 year ago
0
Genome is not getting masked after running RepaetMasker (Not getting any error after run)
#185
vinitamehlawat
closed
1 year ago
2
RepeatMasker apparently requires the input fasta file allow write access, even though it won't write to it.
#184
rsharris
closed
1 year ago
4
Parse .align files to retriever Kimura distance
#183
imu93
closed
1 year ago
1
documentation out of date?
#182
dgordon562
closed
1 year ago
1
- Preparing fixes for 4.1.3. These include missing RepeatDB in Rep…
#181
rmhubley
closed
1 year ago
0
Is RepeatMasker applicable to RNA-seq data(paired or single)?
#180
wutaotao185
closed
1 year ago
1
Can't call method "setLeftLinkedHit"
#179
Ghanizadeh1980
closed
1 year ago
6
The meaning of milliDiv
#178
ZunpengLiu
closed
1 year ago
1
Questions about whether can RepeatMasker find tandem repeats
#177
1835033964
closed
1 year ago
1
Difference in chromosome naming between GTF and FASTA file
#176
mars188
closed
1 year ago
2
MULE appeared in RepeatModeler xxx-families.fa, but no MULE were annotated by RepeatMasker
#175
leon945945
closed
1 year ago
1
- Wasn't building general in 'general.working'.
#174
rmhubley
closed
1 year ago
0
Development
#173
rmhubley
closed
1 year ago
0
![Screen Shot 2022-08-17 at 16 56 05](https://user-images.githubusercontent.com/50833677/185152498-172f86a0-3c9e-445e-a520-563a2329158e.png)
#172
rmhubley
closed
1 year ago
0
RepeatMasker output vanishes
#171
SheepwormJM
closed
1 year ago
3
How to prepare helitron libray?
#170
xiekunwhy
closed
1 year ago
1
Output sorted bigRmsk files for conversion to bigBed
#169
diekhans
closed
1 year ago
0
RepeatMasker overwrites classification information from custom library
#168
oushujun
closed
1 year ago
3
How to deal with asterisks in the .out file?
#167
xyz0o
closed
1 year ago
2
Recover from an unfinished task
#166
BRNiu
closed
1 year ago
1
Output .tbl not seems complete
#165
marco91sol
closed
1 year ago
1
How to filter the .align file
#164
elcortegano
closed
1 year ago
1
Re-classification of repeat library change RepeatMasker results
#163
LeoVincenzi
closed
2 years ago
2
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