rnabioco valr issues - Githubissues

rnabioco / valr

Genome Interval Arithmetic in R

http://rnabioco.github.io/valr/

Other

88 stars 25 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

bed_slop failed test "crossover during negative slop"

#320 raysinensis closed 6 years ago
1
bed_sort failed test "by_chrom option"

#319 raysinensis closed 6 years ago
1
bed_glyph only allows x and y as dataframe names?

#318 nemartins closed 6 years ago
1
issue310 and travis/appveyor fixes

#317 kriemo closed 6 years ago
1
bed_subtract() reports overlapping intervals in larger datasets

#316 kriemo closed 6 years ago
2
don't cache packages on travis

#315 jayhesselberth closed 6 years ago
3
use group_vars to avoid mixing character and symbol vectors.

#314 jayhesselberth closed 6 years ago
2
issue312: prevent infinite loop and drop intervals shorter than num_win

#313 kriemo closed 6 years ago
4
avoiding infinite loop in bed_makewindows() and deprecate genome argument

#312 kriemo closed 6 years ago
1
closest behaviour on book-ended intervals

#311 jayhesselberth closed 6 years ago
0
dplyr 0.7.4 bug in rename() leading to failed tests

#310 kriemo closed 6 years ago
1
dummy test html

#309 jayhesselberth closed 7 years ago
1
dummy test html

#308 jayhesselberth closed 7 years ago
0
update authors

#307 jayhesselberth closed 7 years ago
0
improve behavior of bed_sort with suffixed column names

#306 jayhesselberth closed 6 years ago
0
add unmatched x intervals to intersect when invert = TRUE

#305 jayhesselberth closed 7 years ago
0
use new intersect_impl to speed-up bed_map.

#304 jayhesselberth closed 6 years ago
3
return non-intersecting from intersect_impl

#303 jayhesselberth closed 7 years ago
0
run styler

#302 jayhesselberth closed 7 years ago
0
Return non intersecting

#301 jayhesselberth closed 7 years ago
1
Strategy to speed up bed_map

#300 jayhesselberth closed 7 years ago
1
bed_cluster: reorder ids in R to match chromosome ordering

#299 kriemo closed 7 years ago
3
return non-intersecting intervals from intersect_impl

#298 jayhesselberth closed 7 years ago
2
return non-intersecting intervals from cpp

#297 jayhesselberth closed 7 years ago
1
Update dplyr headers to v0.7

#296 jayhesselberth closed 7 years ago
0
id's are assigned by group name instead of chromosome position.

#295 jayhesselberth closed 7 years ago
4
migrate to numeric/double throughout

#294 jayhesselberth closed 6 years ago
2
calculate jaccard for grouped inputs

#293 jayhesselberth closed 7 years ago
0
valr manuscript revision

#292 jayhesselberth closed 4 years ago
4
new as.tbl_interval and as.tbl_genome S3 generics

#291 jayhesselberth closed 7 years ago
2
De-deprecate bed_sort

#290 jayhesselberth closed 7 years ago
0
report start/end cols when spec is provided to bed_merge()

#289 jayhesselberth closed 7 years ago
0
missing start/end columns if spec is passed to bed_merge

#288 jayhesselberth closed 7 years ago
0
Update to RMariaDB dependency

#287 jayhesselberth closed 4 years ago
2
Use random interval sets for interval statistic examples

#286 jayhesselberth closed 7 years ago
0
Link to sorting page is missing from site

#285 jayhesselberth closed 7 years ago
0
benchmark vignette

#284 jayhesselberth closed 7 years ago
1
WIP: simplifying returning DataFrames from Rcpp Issue192

#283 kriemo closed 7 years ago
0
fix lints

#282 jayhesselberth closed 7 years ago
0
merge absdist and reldist cpp code Issue200

#281 kriemo closed 7 years ago
0
update NSE to use .data argument

#280 jayhesselberth closed 5 years ago
0
Benchmark vignette

#279 jayhesselberth closed 7 years ago
0
OB1 error in bed_flank, issue 277

#278 kriemo closed 7 years ago
0
bed_flank test errors on windows

#277 jayhesselberth closed 7 years ago
0
Use numeric type for all coords

#276 jayhesselberth closed 6 years ago
1
complement reports 1-based start interval

#275 jayhesselberth closed 7 years ago
2
tbl_interval class dropped by dplyr/valr functions

#274 kriemo closed 4 years ago
2
allow zero-starts for intevals

#273 kriemo closed 7 years ago
2
Migrate NSE to rlang

#272 jayhesselberth closed 7 years ago
0
Add column autodetection to read_bed

#271 agillen closed 5 years ago
3

Previous Next