issues
search
rnabioco
/
valr
Genome Interval Arithmetic in R
http://rnabioco.github.io/valr/
Other
88
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
bed_random doesn't return tibble if sorted = FALSE
#369
jayhesselberth
closed
4 years ago
0
Rewrite benchmarks using bench instead of microbenchmark
#368
jayhesselberth
closed
4 years ago
0
Release valr 0.6.1
#367
jayhesselberth
closed
4 years ago
5
rchk unprotect error
#366
kriemo
closed
4 years ago
0
rchk issue
#365
jayhesselberth
closed
4 years ago
2
tabix, bam, and vcf reading
#364
kriemo
closed
1 year ago
2
Changes for dplyr 1.0.0
#363
romainfrancois
closed
4 years ago
3
Drop Rcpp
#362
jayhesselberth
closed
3 years ago
4
allow factors to be returned from cpp side
#361
kriemo
closed
4 years ago
0
bed_intersect function convert factor columns to numeric
#360
frequena
closed
4 years ago
4
Release valr 0.6.0
#359
jayhesselberth
closed
4 years ago
0
replace arrange with radix sort
#358
kriemo
closed
4 years ago
1
use_tidy_github_actions()
#357
jayhesselberth
closed
4 years ago
0
use github actions
#356
jayhesselberth
closed
4 years ago
0
benchmarks
#355
jayhesselberth
closed
4 years ago
3
dplyr v. 1.0.0 compatibility
#354
kriemo
closed
4 years ago
8
fix build against dev dplyr
#353
kriemo
closed
4 years ago
7
Alphanumerical Sorting by Chromosome
#352
canholyavkin
closed
4 years ago
2
bed_intersect reports non-overlapping two adjacent intervals
#351
ItokawaK
closed
5 years ago
1
bed12_to_exons
#350
CeesBM
closed
5 years ago
2
Consider replacing IntervalTree with cgranges
#349
jayhesselberth
closed
1 year ago
1
fix extra interval reporting in bed_closest()
#348
kriemo
closed
5 years ago
0
V0.5.0 rc
#347
jayhesselberth
closed
5 years ago
0
Release valr v0.5.0
#346
kriemo
closed
5 years ago
4
Remove dplyr cpp dependency and build in dplyr v0.8.0 compatibility
#345
kriemo
closed
5 years ago
3
Use xenial for travis
#344
jayhesselberth
closed
5 years ago
0
complete removal of dplyr cpp dependency (WIP)
#343
kriemo
closed
5 years ago
0
More work on dplyr compatibility and performance gains on tibbles with many groups
#342
kriemo
closed
5 years ago
0
dplyr 0.8.0 compatibility
#341
kriemo
closed
5 years ago
0
Release valr 0.4.2
#340
kriemo
closed
5 years ago
0
dont call as_tibble on tibble input related to issue #338
#339
kriemo
closed
5 years ago
1
Incompatible with dplyr 0.7.8 rc
#338
krlmlr
closed
5 years ago
6
Release valr 0.4.1
#337
jayhesselberth
closed
6 years ago
0
add new function `bed_partition()` with cpp implementation
#336
kriemo
closed
6 years ago
1
example to convert tbl_interval to GRanges
#335
jayhesselberth
closed
6 years ago
2
added benchmark comparisons to GenomicRanges
#334
raysinensis
closed
6 years ago
2
Added benchmark comparison of valr and GenomicRanges
#333
raysinensis
closed
6 years ago
1
prepare for release.
#332
jayhesselberth
closed
6 years ago
0
fixes tests warnings for CRAN submission
#331
raysinensis
closed
6 years ago
1
fix tests warnings for CRAN submission
#330
jayhesselberth
closed
6 years ago
1
Additional fix for too many windows reported by makewindows
#329
kriemo
closed
6 years ago
0
incorporated bedtools tests to check output parity
#328
raysinensis
closed
6 years ago
0
closest behavior on book-ended intervals
#327
kriemo
closed
6 years ago
0
bed_glyph: allow x and y arguments to named other than x and y
#326
kriemo
closed
6 years ago
0
bed_makewindows: require that the same number of requested intervals are always returned
#325
kriemo
closed
6 years ago
2
bed_shift and bed_slop failed test "going beyond the start of the chrom"
#324
raysinensis
closed
6 years ago
1
bed_slop failed test "going beyond the end of the chrom"
#323
raysinensis
closed
6 years ago
1
bed_makewindows failed test "alway get the number of requested windows"
#322
raysinensis
closed
6 years ago
2
bed_shift failed test "going beyond the end of the chrom"
#321
raysinensis
closed
6 years ago
0
bed_slop failed test "crossover during negative slop"
#320
raysinensis
closed
6 years ago
1
Previous
Next