rockt SETH issues - Githubissues

rockt / SETH

SNP Extraction Tool for Human Variations

rockt.github.com/SETH

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Bump org.postgresql:postgresql from 42.4.3 to 42.7.2

#47 dependabot[bot] opened 6 months ago
0
Bump org.apache.commons:commons-compress from 1.21 to 1.26.0

#46 dependabot[bot] opened 6 months ago
0
Convert dbSNP into TSV-files: ParseJSONToFile.java misses HGVS names

#45 sg-wbi opened 1 year ago
3
Bump jettison from 1.5.3 to 1.5.4

#44 dependabot[bot] closed 1 year ago
1
Update dependencies to support Scala 2.12

#43 ikuzart closed 1 year ago
2
Use Scala version 2.12

#42 ikuzart closed 1 year ago
3
Bump postgresql from 42.4.1 to 42.4.3

#41 dependabot[bot] closed 1 year ago
0
Bump postgresql from 42.3.3 to 42.4.1

#40 dependabot[bot] closed 2 years ago
0
Unable to run NEN example

#39 yuanhao96 closed 2 years ago
2
Bump postgresql from 42.2.25 to 42.3.3

#38 dependabot[bot] closed 2 years ago
0
Bump postgresql from 42.2.16 to 42.2.25

#37 dependabot[bot] closed 2 years ago
0
Error: cannot find or fail to load the main class de.hu.berlin.wbi.stuff.dbSNPParser.xml.ParseXMLToFile when Parse dbSNP-XML dump

#36 QQ-Peng closed 2 years ago
4
Add flag to identify synonymous variations

#35 Erechtheus opened 2 years ago
0
Detect ss-sequences

#34 Erechtheus opened 2 years ago
0
Bump commons-compress from 1.20 to 1.21

#33 dependabot[bot] closed 3 years ago
0
Use Mutalyzer or hgvs for variant normalization

#32 Erechtheus opened 3 years ago
0
Parse dbSNP from JSON and no longer from XML

#31 Erechtheus opened 3 years ago
1
Bug Report, wrong offset.

#30 YaoXinZhi closed 3 years ago
2
How to run faster ？

#29 YaoXinZhi closed 3 years ago
8
Database '/path/to/derby/database/dbSNP137' not found.

#28 YaoXinZhi closed 3 years ago
2
POST request data

#27 pjcoenen closed 3 years ago
1
Bump junit from 4.8.1 to 4.13.1

#26 dependabot[bot] closed 3 years ago
0
Bump mysql-connector-java from 5.1.22 to 8.0.16

#25 dependabot[bot] closed 4 years ago
0
Add a Codacy badge to README.md

#24 codacy-badger closed 5 years ago
0
Additional evaluation corpus (Amia18)

#23 Erechtheus opened 5 years ago
0
Improve entity normalization using more HGVS mentions

#22 Erechtheus opened 7 years ago
0
Improve named entity normalization using patterns

#21 Erechtheus opened 7 years ago
1
Additional evaluation corpus (TMVar 2.0)

#20 Erechtheus opened 7 years ago
0
Write BRAT compatible annotations

#19 Erechtheus opened 7 years ago
0
Additional evaluation corpora (Nala)

#18 Erechtheus opened 7 years ago
0
Incorrect rsIds and no extracted rsIds

#17 spenagon closed 7 years ago
1
Logging

#16 Erechtheus closed 7 years ago
0
Map variants down to chromosomal location + allele

#15 jhkbg opened 7 years ago
0
Linguistic mapping of mutations to genes

#14 jhkbg opened 7 years ago
0
MutationMention.toHGVS() returns '??' for entities already following the HGVS c. and m. notation

#13 jhkbg closed 7 years ago
1
HGVS c/p copied to invalid transcripts for overlapping genes

#12 jhkbg closed 7 years ago
3
Travis integration

#11 jkirsch closed 7 years ago
0
Incorrectly extracted mutations

#10 jhkbg opened 7 years ago
2
Additional evaluation corpora (Bronco)

#9 Erechtheus opened 8 years ago
0
BioC integration

#8 Erechtheus closed 7 years ago
1
Insdels are classified as type "null"

#7 Erechtheus closed 7 years ago
0
Wrong mutation type recognized

#6 Erechtheus closed 7 years ago
0
Integration Tests and cleaner dbSnp ranking and processing.

#5 ebrevdo closed 10 years ago
1
Increase SETH's coverage of mutations contained HGVS

#4 rockt closed 10 years ago
1
Insdels can also be written using >

#3 rockt closed 10 years ago
0
Extract underspecified mutations

#2 rockt closed 10 years ago
1
SNP-Gene association

#1 Erechtheus closed 10 years ago
0