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role-model
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roleR
R package implementing the RoLE model
https://role-model.github.io/roleR
GNU General Public License v3.0
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make it so random seed can be passed to rcpp
#142
ajrominger
opened
7 months ago
0
reduce `roleModel` and `roleExperiment` to one function
#141
ajrominger
opened
8 months ago
0
when updating phylo, we need to know how much time has past since last time we updated phylo
#140
ajrominger
opened
8 months ago
0
convert rcpp output from the new backend to s4 class slots
#139
ajrominger
closed
7 months ago
0
change class of `edge` and `edgeLength` in rcpp `updatePhylo` module so we don't have to cast them to different types
#138
ajrominger
opened
8 months ago
0
deal with tip labels in `updatePhylo`
#137
ajrominger
closed
8 months ago
0
remove `scale` from phylo class and let it be property of local comm
#136
ajrominger
closed
8 months ago
0
replace rcpp backend
#135
ajrominger
opened
1 year ago
1
just a note
#134
diazrenata
opened
1 year ago
1
remove dependence on snow and do parallelization another way
#133
ajrominger
opened
1 year ago
0
Stochastic bug with msprime "Attempt to sample lineage in a population with size=0"
#132
ajrominger
closed
1 year ago
5
new msprime error (oh joy!)
#131
ajrominger
closed
1 year ago
1
Fix experiment
#130
ajrominger
closed
1 year ago
0
Clean up
#129
ajrominger
closed
1 year ago
0
there are two ways deep copies are being made, is that necessary, or should we pick one and stick with it?
#128
ajrominger
opened
1 year ago
0
initialize and augment local community correctly
#127
ajrominger
closed
1 year ago
1
updating roleShiny to match updates to roleR (?)
#126
diazrenata
opened
1 year ago
6
testing paralellization
#125
diazrenata
closed
1 year ago
2
`runRole` on a `roleExperiment` seems to be duplicating the same results for all lines
#124
ajrominger
closed
1 year ago
1
rbind2 method
#123
diazrenata
closed
1 year ago
0
build is failing because of missing documentation
#122
ajrominger
closed
1 year ago
2
Hill # NaN in genetic and trait results
#121
isaacovercast
opened
1 year ago
20
Update .Rbuildignore to _NOT_ ignore python dir
#120
diazrenata
closed
1 year ago
0
Remove all quick functions
#119
ajrominger
closed
1 year ago
1
get conda env working and figure out a plan for msprime install
#118
ajrominger
opened
1 year ago
4
New model class updated
#117
diazrenata
closed
1 year ago
0
update model class branch from main
#116
diazrenata
closed
1 year ago
0
New model class updated
#115
diazrenata
closed
1 year ago
0
New model class
#114
ajrominger
closed
1 year ago
0
remove dependence on snow package
#113
ajrominger
closed
1 year ago
1
make sure non-void functions declare return type
#112
ajrominger
closed
1 year ago
0
clean up the rcpp functions that are supposed to wrap different data types
#111
ajrominger
closed
1 year ago
0
remove all `quick*` functions
#110
ajrominger
closed
1 year ago
1
Finish ms prime integration
#109
diazrenata
closed
1 year ago
1
Set up docker file
#108
diazrenata
closed
1 year ago
1
Export an .so file with build
#107
diazrenata
opened
1 year ago
0
Nopika
#106
diazrenata
closed
1 year ago
0
Docker Install w/ Full RoLE stack (including msprime)
#105
diazrenata
opened
1 year ago
5
env_filtering C fun test failure
#104
diazrenata
closed
1 year ago
2
actions fails, local does not
#103
diazrenata
closed
1 year ago
1
update roleDataTo/FromCpp to reflect latest version of localComm?
#102
diazrenata
closed
1 year ago
2
documentation of generics for roleExperiments
#101
diazrenata
closed
1 year ago
2
Pinning link to runiverse
#100
diazrenata
opened
1 year ago
2
roleParams _class_ doesn't export
#99
diazrenata
closed
1 year ago
1
Undocumented C code objects
#98
diazrenata
closed
1 year ago
1
nullables in Cpp functions
#97
diazrenata
closed
1 year ago
1
Don't merge, just checking
#96
diazrenata
closed
1 year ago
0
spAbundHarmMean initialization (for modelSteps 1) needs a tweak.
#95
isaacovercast
closed
1 year ago
0
decide how and if to initialized pop gen data
#94
ajrominger
closed
1 year ago
1
review of indexing across R and C++
#93
ajrominger
closed
1 year ago
2
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