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ropensci
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rotl
Interface to Open Tree of Life API
https://docs.ropensci.org/rotl
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Provide integration with other packages for study metadata
#47
fmichonneau
closed
8 years ago
5
Duplicate taxon names from OToL causes error
#46
bomeara
closed
9 years ago
5
add slack notifications for travis builds
#45
sckott
closed
9 years ago
0
update all links to rOpenSci following transfer of repository
#44
fmichonneau
closed
9 years ago
4
Clarify what ott ids are in README
#43
fmichonneau
closed
9 years ago
0
[fix #41] users can't use node_ids to call the API
#42
fmichonneau
closed
9 years ago
0
drop all references to node_id(s)
#41
fmichonneau
closed
8 years ago
9
phylo_from_otl should use tree_to_labels when only one species is returned
#40
fmichonneau
closed
9 years ago
0
add NEWS file
#39
fmichonneau
closed
9 years ago
1
improve fail behavior
#38
fmichonneau
closed
9 years ago
0
improve documentation of ... for customizing API calls
#37
fmichonneau
closed
9 years ago
0
add more examples in docs
#36
fmichonneau
closed
9 years ago
0
fix @import and @importFrom
#35
fmichonneau
closed
9 years ago
0
put single quotes for "not normal" words in DESCRIPTION file
#34
fmichonneau
closed
9 years ago
0
Inproperly formatted study trees?
#33
dwinter
closed
9 years ago
1
make node_id harder to use for users
#32
fmichonneau
closed
9 years ago
0
create function to check that the taxa listed by tnrs_match_names are in the TOL
#31
fmichonneau
opened
9 years ago
14
implement way of getting values for current names for all match_names methods
#30
fmichonneau
closed
9 years ago
0
for consistency provide rank method for match_names class
#29
fmichonneau
closed
9 years ago
1
taxonomy_subtree should work if results is a singleton
#28
fmichonneau
closed
9 years ago
0
add link to studies_properties definitions
#27
fmichonneau
closed
8 years ago
1
check minimum knitr version needed to build vignette
#26
fmichonneau
closed
9 years ago
0
add dontrun to all examples
#25
fmichonneau
closed
9 years ago
0
skip all API tests on CRAN
#24
fmichonneau
closed
9 years ago
0
put code initial vignette into repo
#23
fmichonneau
closed
9 years ago
4
releasing to CRAN
#22
fmichonneau
closed
9 years ago
3
write tests for tnrs_*
#21
fmichonneau
closed
9 years ago
0
tnrs_contexts needs a summary function
#20
fmichonneau
closed
9 years ago
0
write tests for *_match_names functions
#19
fmichonneau
closed
9 years ago
0
some functions are required to use character as input others are more flexible
#18
fmichonneau
closed
9 years ago
0
make sure all functions that return trees can write it to a file
#17
fmichonneau
closed
9 years ago
0
write better DESCRIPTION file
#16
fmichonneau
closed
9 years ago
0
should we drop phytools dependency?
#15
fmichonneau
closed
9 years ago
2
CRAN submission?
#14
sckott
closed
9 years ago
4
ERROR: dependency ‘rncl’ is not available for package ‘rotl’
#13
EwersAquaGenomics
closed
9 years ago
3
use encode argument in otl_POST
#12
fmichonneau
closed
9 years ago
1
induced subtree request by id fails for genus Id
#11
jhpoelen
closed
8 years ago
9
Error with make_phylo
#10
josephwb
closed
10 years ago
3
Fails to install even after rncl install (Windows)
#9
ShanKothari
closed
10 years ago
3
Classes for returns fo various APIs
#8
dwinter
closed
9 years ago
4
tnrs_match_names returns NAs for queries with hyphens
#7
ShanKothari
closed
10 years ago
3
more bad newick strings
#6
bbanbury
closed
9 years ago
1
Convenience functions
#5
dwinter
closed
9 years ago
0
.get_study_tree should throw warning/error if study doesn't exist
#4
fmichonneau
closed
9 years ago
1
Example bad newick string
#3
josephwb
closed
9 years ago
2
Option for chatty return?
#2
bbanbury
closed
9 years ago
5
should tnrs_match_names return the exact string used
#1
fmichonneau
closed
9 years ago
1
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