Add support for end repair of small circular contigs. The `flye_end_repair.sh` script assumes the contig is at least 100 kb in length at the moment, and in a hard-coded way.

rotary-genomics / spokewrench

Toolkit for manipulating circular DNA sequence elements

BSD 3-Clause "New" or "Revised" License

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Closed LeeBergstrand closed 7 months ago

LeeBergstrand commented 7 months ago

@jmtsuji Feel free to delete if addressed.

jmtsuji commented 7 months ago

Addressed in the updated code -- the size range of circular contigs can now be specified in the config file. Closing this issue.